Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0375
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           50   2e-06
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           50   2e-06
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           49   5e-06

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F+
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFD 55



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F+
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFD 55



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  G+   KT QA+V+ +Y+EP+ P Q   VVE+LG+YL+  G
Sbjct: 88  GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD  LM       +T AAI GHDG+VWA+S  F +   +E+  I+  F+
Sbjct: 1   MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFD 55



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/43 (39%), Positives = 28/43 (65%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  G+   KT  ++++ +Y+EP+ P Q   +VE+LG+YLI  G
Sbjct: 88  GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,633,878
Number of Sequences: 37544
Number of extensions: 428752
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)