Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0375
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protei...    52   6e-07
AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3 pr...    52   6e-07
AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1 pr...    37   0.020
AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical...    37   0.020
U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protei...    36   0.026
AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2 pr...    36   0.026

>U55375-5|AAC69045.1|  126|Caenorhabditis elegans Profilin protein 3
           protein.
          Length = 126

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +1

Query: 103 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDE 228
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEE 42



 Score = 35.1 bits (77), Expect = 0.060
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 478
           G  G    KT QAV+IS+YE+ +QP+  +     L +Y  +  Y
Sbjct: 83  GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530910-1|AAT01435.1|  126|Caenorhabditis elegans profilin-3
           protein.
          Length = 126

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +1

Query: 103 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDE 228
           MSW D ++  L+ S  V+KAAI G DG VWAKS+ F IS +E
Sbjct: 1   MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEE 42



 Score = 35.1 bits (77), Expect = 0.060
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 478
           G  G    KT QAV+IS+YE+ +QP+  +     L +Y  +  Y
Sbjct: 83  GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126


>AY530908-1|AAT01433.1|  132|Caenorhabditis elegans profilin-1
           protein.
          Length = 132

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 109 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGF 252
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALF 55


>AL034393-15|CAA22318.1|  132|Caenorhabditis elegans Hypothetical
           protein Y18D10A.20 protein.
          Length = 132

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 109 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGF 252
           W  Y+D    A+  + + AI G  DG+VWA++E    F+ S++E+   VA F
Sbjct: 4   WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALF 55


>U40941-2|AAA81708.3|  131|Caenorhabditis elegans Profilin protein 2
           protein.
          Length = 131

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 109 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGF 252
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALF 54



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 350 KVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 478
           + G    KT QA+VI++YE +  Q     + VE + +YL + GY
Sbjct: 88  QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


>AY530909-1|AAT01434.1|  131|Caenorhabditis elegans profilin-2
           protein.
          Length = 131

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 109 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGF 252
           W DY+      S  + +AAI G DG+VWA+S     F  ++ E+ +  A F
Sbjct: 4   WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALF 54



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 350 KVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 478
           + G    KT QA+VI++YE +  Q     + VE + +YL + GY
Sbjct: 88  QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,703,874
Number of Sequences: 27780
Number of extensions: 369322
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)