Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0375
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           96   3e-22
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.8  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.8  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 42/51 (82%), Positives = 48/51 (94%)
 Frame = +1

Query: 103 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFE 255
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFE 51



 Score = 90.6 bits (215), Expect = 1e-20
 Identities = 39/46 (84%), Positives = 45/46 (97%)
 Frame = +2

Query: 341 ELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 478
           +LGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLG+YL++CGY
Sbjct: 81  KLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126



 Score = 50.0 bits (114), Expect = 3e-08
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +3

Query: 258 ESLLTSGGVTIAGTRYIYLSGTDHIIRANLAR 353
           + +LTS GVT+AG RYIYLSGTD +IRA L +
Sbjct: 53  QDILTSSGVTLAGNRYIYLSGTDRVIRAKLGK 84


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 745 NFNPNFNSLGSNNY 704
           N+N N+N+  +NNY
Sbjct: 333 NYNNNYNNYNNNNY 346


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 418 LDGFFIERNDHSLLCLH 368
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 769 HFDWSIKANFNPNFNSLGSNNY 704
           ++ +S   N+N N+N+  +NNY
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNY 109


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -2

Query: 769 HFDWSIKANFNPNFNSLGSNNY 704
           ++ +S   N+N N+N+  +NNY
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNY 109


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -2

Query: 202 PTL-PTHCHHDRQWQLL*HI 146
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +1

Query: 115 DYVDKQLMASRCVTKAAIAGHDGN 186
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,081
Number of Sequences: 438
Number of extensions: 4574
Number of successful extensions: 26
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)