Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0375
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p...    47   1e-05
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic...    47   2e-05
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S...    46   2e-05
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p...    46   3e-05
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    45   7e-05
At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin ...    30   2.1  
At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    29   2.7  
At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma mem...    29   3.6  
At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin ...    29   3.6  
At1g12530.1 68414.m01451 hypothetical protein ; expression suppo...    28   8.4  

>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
           profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 22/43 (51%), Positives = 28/43 (65%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  G+   KT Q++V  LYEEP+ P Q   VVE+LG+YLI  G
Sbjct: 91  GAGGITIKKTGQSMVFGLYEEPVTPGQCNMVVERLGDYLIEQG 133



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E+  I+  F+
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFD 58


>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
           to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
           thaliana]; identical to cDNA profilin (PRF2) GI:9965570
          Length = 131

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+A I   FE
Sbjct: 1   MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFE 55



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/43 (48%), Positives = 27/43 (62%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  GV   KT QA+V  +Y+EP+   Q   VVE+LG+YLI  G
Sbjct: 88  GPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVERLGDYLIESG 130


>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
           SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
          Length = 168

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
 Frame = +1

Query: 103 MSWQDYVDKQLM---ASRCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGF 252
           MSWQ YVD  LM   A   +T AAI G DG+VWA+S  F ++  +E+  I   F
Sbjct: 38  MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDF 91



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  GV   KT  A+V  +Y+EP+ P Q   VVE LGEYLI  G
Sbjct: 125 GAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESG 167


>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
           profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS------RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E + I+  F+
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFD 58



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 20/43 (46%), Positives = 27/43 (62%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 475
           G  G+   KT Q+ V  +YEEP+ P Q   VVE+LG+YL+  G
Sbjct: 91  GAGGITIKKTGQSCVFGIYEEPVTPGQCNMVVERLGDYLLEQG 133


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +1

Query: 103 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFE 255
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+  I   FE
Sbjct: 1   MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFE 55



 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +2

Query: 347 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLI 466
           G  GV   KT QA+V   Y+EP+   Q   VVE+LG+YLI
Sbjct: 88  GPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVERLGDYLI 127


>At1g16900.1 68414.m02047 curculin-like (mannose-binding) lectin
           family protein very low similarity to Ser Thr protein
           kinase GI:2598067 from (Zea mays); contains Pfam lectin
           (probable mannose binding) domain PF01453
          Length = 919

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 351 LPSSRG*YGLCH*GRCTACPL 289
           LPS  G +G+C   +C ACPL
Sbjct: 279 LPSKCGAFGICEDNQCVACPL 299


>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +2

Query: 137 WHLDVSQKLPLPVMMAMCGQSRKASKFQKMKWRRLWLAL--K*ITANEWRRDDSGHAVHL 310
           + + +++  P   ++AM  +  K     +  W+RLW     K +T+  WR D    AV L
Sbjct: 25  FQIKIAEWNPEKDLLAMVTEDSKIL-LHRFNWQRLWTISPGKPVTSLCWRPDGKAIAVGL 83

Query: 311 PQWHRPYHPRELGKVGVHCMKTQQAVVISLYEE 409
                  H  E GK+  +      AVV   +EE
Sbjct: 84  EDGTISLHDVENGKLLRNLKPHDVAVVCLNWEE 116


>At3g57330.1 68416.m06381 calcium-transporting ATPase, plasma
           membrane-type, putative / Ca2+-ATPase, putative (ACA11)
           identical to SP|Q9M2L4|ACAB_ARATH Potential
           calcium-transporting ATPase 11, plasma membrane-type (EC
           3.6.3.8) (Ca(2+)-ATPase isoform 11) {Arabidopsis
           thaliana}; strong similarity to calmodulin-stimulated
           calcium-ATPase [Brassica oleracea] GI:1805654
          Length = 1025

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -2

Query: 433 CGLLRLDGFFIERNDHSLLCLHAMHADLAKFARMIWSVPL 314
           CG+L   G  IE +D   L  H M A L K   M  S+PL
Sbjct: 686 CGILTAGGVAIEGSDFRNLPPHEMRAILPKIQVMARSLPL 725


>At1g78830.1 68414.m09189 curculin-like (mannose-binding) lectin
           family protein similar to S glycoprotein [Brassica rapa]
           GI:2351186; contains Pfam profile PF01453: Lectin
           (probable mannose binding)
          Length = 455

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 351 LPSSRG*YGLCH*GRCTACP 292
           LPS  G YG C  G C ACP
Sbjct: 334 LPSFCGDYGYCDRGMCNACP 353


>At1g12530.1 68414.m01451 hypothetical protein ; expression
           supported by MPSS
          Length = 192

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 686 RIKGVQNPQNNHMCTLNSSH*LRRHNLSNIKTNERSSYHFIE 561
           R+K  ++ +NN +  +  S  L+RH   N+KT + S   F E
Sbjct: 32  RLKENEDLRNNMISVVKESTSLKRHGAQNMKTRQLSDAIFEE 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,588,217
Number of Sequences: 28952
Number of extensions: 339987
Number of successful extensions: 726
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)