Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0373
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   108   4e-25
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   108   4e-25
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.017
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   5.9  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   5.9  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  108 bits (260), Expect = 4e-25
 Identities = 54/88 (61%), Positives = 62/88 (70%)
 Frame = +1

Query: 7   QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 186
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 187 GXILTGVVQKMKMQRTIVIRRDYFTTYP 270
           G ILTG V   KM RTI+IRR+Y    P
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 36/53 (67%), Positives = 48/53 (90%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 88  LHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  108 bits (260), Expect = 4e-25
 Identities = 54/88 (61%), Positives = 62/88 (70%)
 Frame = +1

Query: 7   QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 186
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSIR
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 187 GXILTGVVQKMKMQRTIVIRRDYFTTYP 270
           G ILTG V   KM RTI+IRR+Y    P
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 36/53 (67%), Positives = 48/53 (90%)
 Frame = +3

Query: 255 LHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVLKV 413
           LH++PKYNR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 88  LHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 342 IGDIVTIGECRPLSKTVRFNVLKV 413
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 139 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 41
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 336 VEIGDIVTIGECRPLSKTVRFNVL 407
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,366
Number of Sequences: 5004
Number of extensions: 34968
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)