Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0372
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0563 - 19542116-19542217,19542631-19542712,19543823-195445...    29   1.8  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    29   1.8  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    28   4.1  
10_08_0240 - 16106963-16107538                                         28   5.5  
10_08_0239 - 16099673-16100251                                         28   5.5  
10_08_0242 - 16120554-16121129                                         27   7.2  
03_02_0539 - 9329572-9330729,9330988-9331041                           27   7.2  
10_08_0238 - 16093780-16094355                                         27   9.6  
10_08_0232 - 16053034-16053597                                         27   9.6  

>07_03_0563 -
           19542116-19542217,19542631-19542712,19543823-19544595,
           19545207-19545296,19545612-19545689,19546112-19546207,
           19546285-19546365,19546587-19546787,19546875-19546967,
           19547052-19547116,19547684-19547715,19548844-19548956
          Length = 601

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 347 RNHASGSGYYFGDANSAGSGLTNNYYPYYS--TSGAGFNGLYY 469
           RN   G+G + G+ N+ GSG +N+   + +   +G+ FN ++Y
Sbjct: 506 RNGGGGNGGHPGEQNNDGSGFSNSGISFTTPRLAGSHFNYIFY 548


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  ADVSHLGXXYKAPQTSYGYPSYQLGESSSHQQSSKLGDIYD 203
           +DV+  G   K P     Y     GE  SH+++ K G IYD
Sbjct: 558 SDVAGWGAFIKNPVNRNDYLGEYTGELISHREADKRGKIYD 598


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +3

Query: 81  ADVSHLGXXYKAPQTSYGYPSYQLGESSSHQQSSKLGDIYD 203
           +DVS  G   K     + Y     GE  SH+++ K G IYD
Sbjct: 755 SDVSGWGAFLKNSVGKHEYLGEYTGELISHKEADKRGKIYD 795


>10_08_0240 - 16106963-16107538
          Length = 191

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 359 SGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 460
           SGSG  +G  + +     N YY Y  +S AG  G
Sbjct: 85  SGSGSGYGSGSGSSQTSQNGYYGYGGSSSAGGAG 118


>10_08_0239 - 16099673-16100251
          Length = 192

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +2

Query: 359 SGSGYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 460
           SGSGY  G  +S  S   N YY Y  +S AG  G
Sbjct: 87  SGSGYGTGSGSSQTS--QNRYYSYGGSSSAGGAG 118


>10_08_0242 - 16120554-16121129
          Length = 191

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 362 GSGYYFGDANSAGSGLT--NNYYPYYSTSGAGFNG 460
           GSG   G  + +GS  T  N YY Y  +S AG +G
Sbjct: 84  GSGSGSGSGSGSGSSQTSQNGYYGYGGSSSAGGSG 118


>03_02_0539 - 9329572-9330729,9330988-9331041
          Length = 403

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 350 NHASGSGYYFGDANSAGSGLTNNYYPYYSTSGAG 451
           N+  G+G   G  N  G   T N+  ++S+SG G
Sbjct: 362 NNNGGNGGSDGGGNGGGGSWTMNFPGFHSSSGGG 395


>10_08_0238 - 16093780-16094355
          Length = 191

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +2

Query: 359 SGSGYYFGDANSAGSGLTNNYYPY---YSTSGAGFNG 460
           SGSGY  G  +S  S   N YY Y    S SGAG  G
Sbjct: 87  SGSGYGTGSGSSQTS--QNGYYGYGGSSSASGAGVGG 121


>10_08_0232 - 16053034-16053597
          Length = 187

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 368 GYYFGDANSAGSGLTNNYYPYYSTSGAGFNG 460
           GY  G    +GS + + Y+P ++ + A  NG
Sbjct: 129 GYGAGSGMGSGSSMLHEYFPSFTNARASANG 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,866,052
Number of Sequences: 37544
Number of extensions: 208038
Number of successful extensions: 466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)