Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0372
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)                     29   3.2  
SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)                 28   5.6  
SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)                   27   7.4  
SB_41030| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     27   9.8  

>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
          Length = 1165

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 345 TETMHLDLDITLVTLIRLAVD*PITTTHIILPLALVSTDCTIRFLPAVARTPEVSLSPIY 524
           T T+HL    T + L+ +    P+ T   +LPL +++T      LP V  T  + L  I 
Sbjct: 532 TTTLHLVTITTTLPLVVITTILPLVTITTLLPLVVITT-----ILPLVVITTTLPLVAIT 586

Query: 525 STI 533
           +T+
Sbjct: 587 TTL 589


>SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)
          Length = 419

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 429 IILPLALVSTDCT--IRFLPAVARTPEVSLSPIY 524
           +IL   L   DCT  + F+P ++R P V LSP +
Sbjct: 100 LILAFFLSMVDCTSSVAFIPYMSRFPMVYLSPYF 133


>SB_52240| Best HMM Match : DUF1700 (HMM E-Value=4.1)
          Length = 254

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 375 TLVTLIRLAVD*PITTTHIILPLALVSTDCTIRFLPAVARTPEVS 509
           T+  L+ + +  P++T HI+L + +    CTI  L  V     VS
Sbjct: 196 TIQILLIVVIPGPVSTIHILLIVVIPGPVCTIHILVIVVVNGPVS 240


>SB_41030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +3

Query: 327 LLVRLATETMHLDLDITLVTL--IRLAVD*PITTTHIILPLALVSTDCTIRF-LPAVART 497
           L + LA  ++ L +D+ L TL  + L +D  + +  + + LAL S + T+   L +V  T
Sbjct: 181 LTMDLALCSVELTMDLALCTLCSVELTMDLALCSVELTMDLALCSVELTMDLALCSVELT 240

Query: 498 PEVSLSPIYSTI 533
            +++L  +  T+
Sbjct: 241 MDLALCSVELTM 252


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 315 AXDPLLVRLATETMHLDLDITLVTLIRLAVD*PITTTH 428
           A  PL   LATE   L  D+T+  ++ +A   PI  TH
Sbjct: 529 ALSPLPTPLATEESDLPSDVTMAAIV-VATANPIAMTH 565


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,367
Number of Sequences: 59808
Number of extensions: 216948
Number of successful extensions: 553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)