Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0372
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.        27   8.6  
U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GL...    27   8.6  
AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line he...    27   8.6  

>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 371 YYFGDANSAGSGLTNNYYPYYSTSGAGFNGLYY 469
           YY+ + N+ G    N Y  YY       NG YY
Sbjct: 24  YYYPNNNNNGYNYNNGYTTYYYYPNNNNNGYYY 56


>U60449-1|AAB03510.1|  974|Caenorhabditis elegans GLH-2 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 353 HASGSGYYFGDANSAGSGL--TNNYYPYYSTSGAGFNG 460
           +A G+G  FG +N+ GSG    NN  P +    AG  G
Sbjct: 42  NAGGTG--FGSSNNGGSGFGGNNNVGPRFGNGNAGGTG 77


>U60194-1|AAB03337.1|  974|Caenorhabditis elegans RNA helicase GLH-2
           protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 353 HASGSGYYFGDANSAGSGL--TNNYYPYYSTSGAGFNG 460
           +A G+G  FG +N+ GSG    NN  P +    AG  G
Sbjct: 42  NAGGTG--FGSSNNGGSGFGGNNNVGPRFGNGNAGGTG 77


>AC006625-11|AAK68269.1|  974|Caenorhabditis elegans Germ-line
           helicase protein 2 protein.
          Length = 974

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 353 HASGSGYYFGDANSAGSGL--TNNYYPYYSTSGAGFNG 460
           +A G+G  FG +N+ GSG    NN  P +    AG  G
Sbjct: 42  NAGGTG--FGSSNNGGSGFGGNNNVGPRFGNGNAGGTG 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,845,289
Number of Sequences: 27780
Number of extensions: 162976
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)