Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0372
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    30   0.86 
At5g61900.3 68418.m07767 copine BONZAI1 (BON1) nearly identical ...    29   2.6  
At5g61900.1 68418.m07766 copine BONZAI1 (BON1) nearly identical ...    29   2.6  

>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 78  LADVSHLGXXYKAPQTSYGYPSYQLGESSSHQQSSKLGDIYD 203
           ++DVS  G   K   + + Y     GE  SH+++ K G IYD
Sbjct: 758 ISDVSGWGAFLKNSVSKHEYLGEYTGELISHKEADKRGKIYD 799


>At5g61900.3 68418.m07767 copine BONZAI1 (BON1) nearly identical to
           BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
           Pfam profile PF00168: C2 domain
          Length = 578

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 380 GDANSAGSGLTNNYYPYYSTSGAGFNGLYYPI 475
           G  +SA  G TN+   YY  S  GFNGL+  I
Sbjct: 20  GSGSSAALGATNDALDYYLKS-KGFNGLFSQI 50


>At5g61900.1 68418.m07766 copine BONZAI1 (BON1) nearly identical to
           BONZAI1 [Arabidopsis thaliana] GI:15487382; contains
           Pfam profile PF00168: C2 domain
          Length = 578

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 380 GDANSAGSGLTNNYYPYYSTSGAGFNGLYYPI 475
           G  +SA  G TN+   YY  S  GFNGL+  I
Sbjct: 20  GSGSSAALGATNDALDYYLKS-KGFNGLFSQI 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,950
Number of Sequences: 28952
Number of extensions: 160445
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)