Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0371
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.82
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 27 1.9
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 27 1.9
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 3.3
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 27 3.3
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 26 4.4
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 4.4
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 4.4
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.4
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 5.8
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 7.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 7.7
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.7
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 7.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.7
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 28.7 bits (61), Expect = 0.82
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 300 EAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDF---H 470
+A+ +L VE K+ + + + A+I N+ + K E +E+R+ + KRK +K+F
Sbjct: 492 QARRRRLEVE---KTEPKKLARPAKIKNEAWSKQKEVKEKRNTRREKRK--SKKEFLKAQ 546
Query: 471 ENDNLNVLK 497
+N+ N LK
Sbjct: 547 KNEASNNLK 555
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 267 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKY 434
D YNL A+ ++ ++ + +S + + + E + +KY E+R+R+ MKY
Sbjct: 8 DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK-MKY 62
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 267 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKY 434
D YNL A+ ++ ++ + +S + + + E + +KY E+R+R+ MKY
Sbjct: 8 DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK-MKY 62
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 399 YSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLMN 515
+ Q +++ ++ +QLQ+ H ND +N A+L N
Sbjct: 11 FEGQMQQKKRRFDANLVQLQESEHRNDQINETVDAELTN 49
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 576 SSKILFILSIVCLLIIALLFCSSIWLFLIHLNCHFHEN-PSVAVVSVYGISCLCAH 412
SSK I S V + ++ L+ ++F +C F++ ++ ++ +SCL H
Sbjct: 197 SSKFYLIGSTVGMYVVGLVLTILTYVFFCASSCSFNQAINTINLLLCIAVSCLSVH 252
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 546 VCLLIIALLFCSSIWLFLIHLN 481
VCL +I+L CS+ W F+ + N
Sbjct: 11 VCLRLISLRNCSNTWTFVPYAN 32
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 125 ALVRADILNLPNPAKVSSILESLI 54
ALV+ D+ L N +K+S++LES I
Sbjct: 536 ALVKDDVETLCNSSKISALLESSI 559
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 452 ATEGFS*K*QFKCIKNSQIDEQNNSAMINRQTIDNMNRI-LEEPNKAT 592
A +G S +FK + S + + NS MIN++ + RI +PN T
Sbjct: 279 AVQGISQSNKFKALNQSIVQQIENS-MINKKDLVERTRIDYSDPNNKT 325
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 327 EFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHEN 476
EF KSF + + KRA +M K Q+ + E + +K +Q +K+ E+
Sbjct: 404 EFNIKSFNRNLVKRAAVMAK-LQRNQLEEELKAKGIYKPTIQGEKEEEED 452
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 348 EQMICKRAEIMNKCFQKYSEQRERRDMKYHKRK 446
E +I K E++ + +KY E+R R + KRK
Sbjct: 236 EIIIEKDPELLKRQAEKYEEERSRARRRLEKRK 268
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 594 AVALFGSSKILFILSIVCLLIIALLFCSSIWLFLIH 487
A+ + S+KI + + L+ ALLF S IW L++
Sbjct: 564 AMHMTQSAKIGHYMKVPPRLVAALLFTSGIWSSLVN 599
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 438 KRKLQLQKDFHENDNLNVLKIAKLMN 515
K + + K EN+NL V KIA++ N
Sbjct: 107 KNLISISKKLSENENLPVSKIAEVTN 132
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 506 IDEQNNSAMINRQTIDNMNRILEEPNKATARFAA 607
+D+Q + IN+Q N EEP ++ A A
Sbjct: 388 VDKQETAKPINKQVSSNETSAQEEPRESVAALRA 421
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 40 SITSKMRDSSID---ETLAGFGKLRISALTKAVELSPLVKEATIGP 168
SI S MR D E L GF L S ++V LSP+ + P
Sbjct: 157 SINSVMRSILCDITAELLEGFSSLEFSIHARSVILSPITDMPHLAP 202
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 509 DEQNNSAMINRQTIDNMNRILEEPNKATARFAAITDS 619
D QN + +TI+N+N+ L P K +++T++
Sbjct: 1687 DLQNKITQLE-ETIENLNKQLSNPEKTDESTSSVTET 1722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,121
Number of Sequences: 5004
Number of extensions: 53564
Number of successful extensions: 171
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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