Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0371
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0893 + 7043130-7043182,7043309-7043335,7043461-7043560,704... 33 0.21
03_01_0122 + 954356-954491,954877-955030,955141-955231,955732-95... 30 2.0
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 29 2.6
07_03_0073 - 13063209-13063403,13063489-13063579,13063707-130637... 29 3.4
01_07_0214 - 42055848-42056155,42056263-42056442,42056560-420570... 29 3.4
01_01_0192 - 1672837-1673181,1673255-1673485,1673854-1674099,167... 29 3.4
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827... 29 4.5
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 28 6.0
04_04_1508 - 34072409-34072760,34073044-34073201 28 6.0
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 28 6.0
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 7.9
01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391... 28 7.9
>01_01_0893 +
7043130-7043182,7043309-7043335,7043461-7043560,
7045110-7045256,7045342-7045422,7045509-7045654,
7046030-7046099
Length = 207
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 368 GGNNEQMLSEV*RTT*AQRHEIP*TETTATEGFS*K*QFKCIKNSQIDEQNNSAMINRQT 547
GGN+ + + + A + IP ET+A EGF+ + F+CI + I + + T
Sbjct: 131 GGNSRTVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIARNAIKNEPEEEIYLPDT 190
Query: 548 ID 553
ID
Sbjct: 191 ID 192
>03_01_0122 +
954356-954491,954877-955030,955141-955231,955732-955806,
955884-955972,956084-956202,956338-956478,956817-956893,
958615-959217
Length = 494
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = -2
Query: 281 IITE-IPSELSSTRSSGNGSILAGICFSS*INSFFAGLLGPMVASFTKG--LNSTALVRA 111
I+TE ++++ S G G I + C+ + +SFF G + S +G L A+
Sbjct: 58 ILTEGKATKITGVSSIGGGCINSAQCYKTDASSFFVKTNGRIGPSMFEGEALGLKAMYDT 117
Query: 110 DILNLPNPAKVSSILESLIFEVM 42
+ + +P P KV S+ F +M
Sbjct: 118 NSIRVPLPYKVGSLPTGGSFIIM 140
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 384 KCFQKY-SEQRERRDMKYHKRKLQLQKDFHEN-DNL 485
KC +++ S RR + H+R LQ++KDF +N DN+
Sbjct: 30 KCPREFCSSINYRRHTRVHRRTLQIEKDFLKNRDNI 65
>07_03_0073 -
13063209-13063403,13063489-13063579,13063707-13063736,
13063827-13063937,13064023-13064260,13064366-13064837,
13065054-13065563,13065993-13066481
Length = 711
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 213 PRQN*TVARGPC*RKLRGDLGYNLIMKE 296
PR + T++ G C +K RG+ G NL+ KE
Sbjct: 26 PRTDTTMSGGACPKKKRGEKGRNLMPKE 53
>01_07_0214 -
42055848-42056155,42056263-42056442,42056560-42057077,
42059507-42060063
Length = 520
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 103 RISALTKAVELSPLVKEATI--GPNSPAKKELIYEEKQIPA---KIEPLPED 243
R+ A+ +SP + + T+ GPN YE IPA K+ LP+D
Sbjct: 340 RLGVRVPAIVISPWINKGTVVHGPNGSPTATSEYEHSSIPATVKKLFDLPQD 391
>01_01_0192 -
1672837-1673181,1673255-1673485,1673854-1674099,
1674247-1674362,1675735-1675891
Length = 364
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 363 KRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLN 488
++ ++ F S + R+ KY+K++ L KDF E + +N
Sbjct: 38 RKPPFFSRIFPAGSHGKHRKIAKYYKKQENLLKDFSEMETMN 79
>08_02_0619 -
19382172-19382366,19382453-19382545,19382621-19382702,
19382793-19382903,19383323-19383681,19384330-19384533,
19384582-19384756,19384885-19385474,19385555-19385800
Length = 684
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 213 PRQN*TVARGPC*RKLRGDLGYNLIMKE 296
PR + T + G C +K RG+ G NL+ KE
Sbjct: 108 PRTDTTTSGGACPKKKRGEKGRNLMPKE 135
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = -1
Query: 564 LFILSIVCLLIIALLFCSSIWLFLIHLNCHFHENPSVAVVS 442
+ + + CL + AL+ S+W +++ ENP A S
Sbjct: 687 ILVAVVACLFVAALVSAPSVWSRIVNERESLWENPHAAAAS 727
>04_04_1508 - 34072409-34072760,34073044-34073201
Length = 169
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Frame = -1
Query: 561 FILSIVCLLIIALLFCSSIWLFLIHLNCHFHE----NPSVAVVSV 439
F L ++CLL I + CS + L HL+ +FHE P+ VV+V
Sbjct: 6 FPLLVLCLLPI--IVCSVVDAELTHLHFYFHEVDAGTPNATVVNV 48
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 491 IKNSQIDEQNNSAMINRQTIDNMNRILEEPNKATARFAAITDS 619
+KNS++D+ ++ N I+N+ L E N T + D+
Sbjct: 811 VKNSEVDKLKHALDENNSEIENLKHTLNEKNSETDKLKQDIDA 853
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 443 PFMVFHVSALTLFAILLKAFVHYFRPF 363
P F + A+T+F +L+ AF +F PF
Sbjct: 10 PAHTFQIIAITVFFLLVVAFYAFFAPF 36
>01_06_0899 +
32837027-32837215,32837366-32837547,32839056-32839102,
32839426-32839500,32839595-32839726,32839800-32839972,
32840005-32840277,32840386-32840519,32840640-32840726,
32840834-32840948
Length = 468
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 483 NCHFHENPSVAVVSVYGISCLCAHVVRYTSESIC 382
+C+ H N VA+VSV LC + + ES+C
Sbjct: 283 HCNLHYN--VAIVSVKDFRALCPANLHHEQESVC 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,627
Number of Sequences: 37544
Number of extensions: 301234
Number of successful extensions: 844
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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