Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0371
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)                    31   1.1  
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   31   1.1  
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)                    31   1.1  
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)              31   1.1  
SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)                       28   6.1  
SB_20118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)                     28   6.1  
SB_28699| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)                    28   8.0  
SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)                  28   8.0  
SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_54628| Best HMM Match : RecR (HMM E-Value=0.062)
          Length = 1082

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -1

Query: 537  LIIALLFCSSIWLFLIHLNCHF--HENPSVAVVSVYGISCLCAHVV-RYTSESIC 382
            L +A+  CS  WL+     C F   +N S   VSV  +S LCA V+ R T   IC
Sbjct: 935  LSVAICQCSVQWLYAFKRVCRFVSRQNLSTKFVSV-DLSVLCAVVICRKTRLPIC 988


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/57 (22%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 348 EQMICKRAEIMNKCFQKYSEQRE-RRDMKYHKRKLQLQKDFHENDNLNVLKIAKLMN 515
           E+++ ++A++     +K ++Q+E ++++  HK   +  KD  EN+   V  + +L +
Sbjct: 278 EKLLAQKADLEKVIAEKEAQQKELQQELSIHKSATEKLKDLEENEKRLVTSVQELQS 334


>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 434

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/63 (25%), Positives = 37/63 (58%)
 Frame = +3

Query: 291 KECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFH 470
           +E  A+  Q   E  RK  E++  +R EI  + FQ+  E+ E+R+ +  +++ ++++++ 
Sbjct: 215 REKAAERKQKEEEEERKVQERLWLEREEIAQQEFQRRLEREEKREQERLEQESRIREEWE 274

Query: 471 END 479
           E +
Sbjct: 275 EQE 277


>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
          Length = 577

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = -1

Query: 564 LFILSIVCLLI--IALLFCSSIWLFLIHLNCHFHENPSVAVVSVYGISCLCAHVVRYTSE 391
           L IL + C L+  I   F +  WLF+I  N        +  +S+YG+  L  H  R + E
Sbjct: 329 LTILILPCYLVYVICSTFAAGTWLFVIISNSLVTVVQLIGALSIYGLFVLNVHKER-SWE 387

Query: 390 SICSLFPPFYKSSVQKIF 337
           ++      +Y ++V K+F
Sbjct: 388 NLDDYV--YYINAVSKVF 403


>SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 273 GYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQ 452
           GY     +   QL +L VEF  KS E +  K A+ M    ++   Q+ +   +Y K +  
Sbjct: 145 GYKQAFNDKSEQLSRLQVEFDAKSTE-LANKHAQEMTAEKERILHQKSKTQQQYEKERRD 203

Query: 453 LQK 461
           L++
Sbjct: 204 LEQ 206


>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 306 QLHQLSVEFFRKSFE-QMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDN 482
           +L +   E   KS E + + K     +K  +KY + +++ D+K H+ KL   +      +
Sbjct: 501 ELKEAQDELNSKSKELETVVKELATCSKVAEKYQQLKQQYDLKGHEAKLAETRMKQSTHH 560

Query: 483 LNVLKIAKLMNRTTVQ 530
           L + +I  L N    Q
Sbjct: 561 LQLEEIKTLENNLDEQ 576


>SB_20118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -1

Query: 552 SIVCLLIIALLFCSSIWLFLIHLNCHFHENPSV 454
           S+V +L+     C++++   +++NC F+ +PS+
Sbjct: 18  SLVRILLEGFFTCNTVYFGQVYINCPFNAHPSL 50


>SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)
          Length = 817

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 67  SIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYE 201
           S   TL    +  ++ LTK ++ S    EA      P+K++LIY+
Sbjct: 225 SSQPTLNAINQQAVATLTKRLKPSVTSSEAAANAERPSKEQLIYQ 269


>SB_28699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 384 KCFQKYSEQRERRDMKYHKRKLQLQKDFHEN 476
           KC +   +QR+R ++  H+R+ +L+ D  EN
Sbjct: 14  KCEEYLKDQRDRENVTIHRRRRKLKVDDGEN 44


>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
          Length = 270

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 405 EQRERRDMKYHKRKLQLQKDFHENDNLNVL 494
           E ++RR  +  KRK QLQK   EN  + +L
Sbjct: 241 EAQKRRKQRAKKRKQQLQKQIEENKVMLIL 270


>SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)
          Length = 508

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
 Frame = -1

Query: 648 PL*QMHILV*LSVMAANRAVALFGSSKILFILS-------IVCLLIIALLFCSSIWLFLI 490
           P   +HI V     A+NR     G    LF+LS        VC+  + +L CS  +L+L 
Sbjct: 274 PFQALHIPVSRLTSASNRRPVDVGGGASLFLLSRGIYEHVAVCICAVGILHCSRDFLYLY 333

Query: 489 HLN 481
            L+
Sbjct: 334 GLD 336


>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -1

Query: 582 FGSSKILFILSIVCLLIIALLFCS-SIWLFLIHLNCHFHENPSVAVVSVYGISCLC 418
           FG  +I   LS++ LL+      S +++   + +N     N   A++ + G++CLC
Sbjct: 401 FGGQRIRVWLSVLSLLLYIFTKISVNLYSGALFINLALGWNLYAAIILLLGLACLC 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,998,081
Number of Sequences: 59808
Number of extensions: 364492
Number of successful extensions: 1021
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)