Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0371
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical ...    31   1.0  
AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     30   1.8  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     30   1.8  
Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical p...    28   5.4  
AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U41528-2|AAK39168.1|  125|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    28   7.1  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
 Frame = -1

Query: 636 MHILV*LSVMAANRAVAL---FGSSKILFILSIVCLLIIALLFCSSIWLFLIHLNC--HF 472
           +HIL+ L  +A +    L   F +S+I F+L++V  L + L+    + LFL +LN   +F
Sbjct: 112 IHILLFLLAIANSIKYLLTLKFSNSQI-FLLNLVKKLNVVLISKDFLLLFLCYLNSIQYF 170

Query: 471 HENPSVAVVSVYGISCLCAHVV 406
            EN   +++S Y I  L  ++V
Sbjct: 171 SENNLQSLLSYYMILLLFLNIV 192


>AC024843-8|AAM48560.1|  726|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3c protein.
          Length = 726

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +3

Query: 363 KRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKL 509
           K+ E+M    QKY +++E ++ +  ++K  + K   ++ N+ V ++ K+
Sbjct: 473 KKLELMKAEEQKYQKEKEMKEFEEQQKKAMMTKQVEDDFNVMVEQLEKM 521


>AC024843-7|AAF60843.2|  743|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3a protein.
          Length = 743

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +3

Query: 363 KRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKL 509
           K+ E+M    QKY +++E ++ +  ++K  + K   ++ N+ V ++ K+
Sbjct: 473 KKLELMKAEEQKYQKEKEMKEFEEQQKKAMMTKQVEDDFNVMVEQLEKM 521


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 GDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKR 443
           GDL      +E   Q  +L+   + K+  +MI  +  +    F +Y+E  ER+ ++  K 
Sbjct: 36  GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAVTAHLFNRYTEDEERKRVEQQKN 95

Query: 444 K 446
           K
Sbjct: 96  K 96


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 GDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKR 443
           GDL      +E   Q  +L+   + K+  +MI  +  +    F +Y+E  ER+ ++  K 
Sbjct: 58  GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAVTAHLFNRYTEDEERKRVEQQKN 117

Query: 444 K 446
           K
Sbjct: 118 K 118


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 GDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKR 443
           GDL      +E   Q  +L+   + K+  +MI  +  +    F +Y+E  ER+ ++  K 
Sbjct: 36  GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAVTAHLFNRYTEDEERKRVEQQKN 95

Query: 444 K 446
           K
Sbjct: 96  K 96


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 264 GDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKR 443
           GDL      +E   Q  +L+   + K+  +MI  +  +    F +Y+E  ER+ ++  K 
Sbjct: 58  GDLNAFHSGEELHRQRSELARANYEKARPEMIANQRAVTAHLFNRYTEDEERKRVEQQKN 117

Query: 444 K 446
           K
Sbjct: 118 K 118


>Z83223-1|CAB05718.1|  393|Caenorhabditis elegans Hypothetical
           protein E01G4.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 306 QLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHEND 479
           Q H+   +F  +  E  + K+ E M K +   +E +E+R  K+ KRK  + ++  END
Sbjct: 339 QWHESDTDFQTRRAE--LAKQYENMKKQWMSVTEDQEKRFTKFVKRKSLVGEEI-END 393


>Z78542-10|CAB01751.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 555 LSIVCLLIIALLFCSSIWLFLIH 487
           +S +C  II  LFC+  + FL H
Sbjct: 42  ISFICFTIIFCLFCTETYTFLFH 64


>AL031620-6|CAA20929.2|  428|Caenorhabditis elegans Hypothetical
           protein C18B12.6 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 555 LSIVCLLIIALLFCSSIWLFLIH 487
           +S +C  II  LFC+  + FL H
Sbjct: 42  ISFICFTIIFCLFCTETYTFLFH 64


>Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical
           protein F09C3.3 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/63 (23%), Positives = 35/63 (55%)
 Frame = +3

Query: 369 AEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLMNRTTVQ*STGRQ 548
           ++++NK F K+  +     MKY + K+ ++   +++  L  ++   L NRT+++   G++
Sbjct: 252 SQLLNK-FLKHWMRGSNPRMKYLQAKVDIKNQKYKSQILEGIETLPLKNRTSIESFDGKK 310

Query: 549 LTI 557
             I
Sbjct: 311 ARI 313


>Z81456-1|CAB03810.1|  548|Caenorhabditis elegans Hypothetical
           protein B0462.1 protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 360 CKRAEIMNKCFQKYSEQRERRDMKYHKR 443
           CK AE++N  F +Y+++ +    +Y K+
Sbjct: 305 CKEAEVLNNAFDEYNKRMDELHNEYCKK 332


>Z75554-1|CAA99953.3|  681|Caenorhabditis elegans Hypothetical
           protein ZC455.1 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 312 HQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDF 467
           H LS E   K F+Q+     + +N    K SE   R D    + +L  Q DF
Sbjct: 293 HNLSGEELYKRFQQISLSHVQTLNIVADKLSEDARRGDEPVSRNRLS-QLDF 343


>U53149-5|AAA96121.2|  427|Caenorhabditis elegans Hypothetical
           protein C24B5.1 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 552 SIVCLLIIALLFCSSIWLFLIHLNCHFHENPSVAVVS 442
           +I+C+L+ ++L  +   L +  LN H  +NP    VS
Sbjct: 247 TIICMLVPSVLIITCNCLVVSKLNSHIKKNPGSPAVS 283


>U41528-2|AAK39168.1|  125|Caenorhabditis elegans Hypothetical
           protein C15C7.5 protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +3

Query: 288 MKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDF 467
           +++ + QL  L+ ++  K  E++      +M    Q+  E+RE+R   +H+R  Q Q + 
Sbjct: 46  IRKLDTQLDHLN-DYMSKMEERLKAHNDRMMETLKQQ-KEEREKRRRSFHERMSQNQSED 103

Query: 468 HE--NDNLNVLKIAKLMNRT 521
            E      ++LK  + + RT
Sbjct: 104 EEFKKQMSSILKRVQSVKRT 123


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 408 QRERRDMKYHKRKLQLQKDFHENDNLNVLKIAK 506
           ++ER++ +  KRK +L++    N+ L  L+IA+
Sbjct: 196 EKERKEQEERKRKQELEEQRKRNEELKRLRIAE 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,622,286
Number of Sequences: 27780
Number of extensions: 298136
Number of successful extensions: 970
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)