Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0371
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.88 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.88 
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   2.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   2.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.2  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -1

Query: 279 YNRDPLGAFFNKVLWQRFNFGGDLFFF 199
           Y+      F+N  +W RFN    ++ +
Sbjct: 114 YSAKTFDVFYNTAVWARFNVNEQMYLY 140


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -1

Query: 279 YNRDPLGAFFNKVLWQRFNFGGDLFFF 199
           Y+      F+N  +W RFN    ++ +
Sbjct: 114 YSAKTFDVFYNTAVWARFNVNEQMYLY 140


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +3

Query: 339 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLMNR 518
           K  E+   ++    ++  ++ S + ER+  KY +R  +  +D  E +     KI   ++ 
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSN 87

Query: 519 TTV 527
            T+
Sbjct: 88  KTI 90


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +3

Query: 339 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLMNR 518
           K  E+   ++    ++  ++ S + ER+  KY +R  +  +D  E +     KI   ++ 
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSN 87

Query: 519 TTV 527
            T+
Sbjct: 88  KTI 90


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 540 LLIIALLFCSSIWLFLIHLNCHFHENPS 457
           LL   +L   SIW+ +  LN HF  +PS
Sbjct: 316 LLFTMILVTLSIWITVCVLNVHF-RSPS 342


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/25 (32%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 274 PRSPRSFLQQGPLATV-QFWRGFVF 203
           P++   FL++GP+A + + + G V+
Sbjct: 145 PKNTNKFLEKGPVALINELYPGVVY 169


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 650 FHYNRCIF*YDCQLWPQIELWLY 582
           FH  R ++ Y+   +  I  W+Y
Sbjct: 276 FHVQRLLYVYEDSTYDDINQWVY 298


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +3

Query: 405 EQRER--RDMKYHKRKLQLQKDFHENDNLNVLKIAKLMNRTTV 527
           EQ E   R+M    +K + ++D H   N   + +A L  R  +
Sbjct: 141 EQTEEMYREMLLEHKKRRARRDIHPELNTQGIALADLTQRAQI 183


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 576 SSKILFILSIVCLLI 532
           SSKI FILS+V L I
Sbjct: 23  SSKIEFILSVVGLAI 37


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -1

Query: 576 SSKILFILSIVCLLI 532
           SSKI FILS+V L I
Sbjct: 76  SSKIEFILSVVGLAI 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,365
Number of Sequences: 438
Number of extensions: 3769
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)