Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0371
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    29   2.8  
At2g26870.1 68415.m03224 phosphoesterase family protein low simi...    28   5.0  
At3g46200.1 68416.m05001 MutT/nudix family protein similar to he...    28   6.6  
At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containi...    27   8.7  
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ...    27   8.7  
At1g16060.2 68414.m01927 ovule development protein, putative sim...    27   8.7  
At1g16060.1 68414.m01926 ovule development protein, putative sim...    27   8.7  

>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 25   EILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYEE 204
            EIL    + +     +DET A   K R +A   A E  P++KE  I      K EL+ EE
Sbjct: 930  EILKLKSSFEEMRKKVDETNALLLKEREAAKKAAEEAPPVIKETQILVEDTKKIELMTEE 989


>At2g26870.1 68415.m03224 phosphoesterase family protein low
           similarity to SP|Q9RGS8 Non-hemolytic phospholipase C
           precursor (EC 3.1.4.3) (Phosphatidylcholine
           cholinephosphohydrolase) {Burkholderia pseudomallei};
           contains Pfam profile PF04185: Phosphoesterase family
          Length = 514

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 73  DETLAGFGKLRISALTKAVELSPLVKEATI--GPNSPAKKELIYEEKQIPAKIEPL 234
           D  L  F +L I   T AV  SP +++ T+  GPN        YE   IPA ++ L
Sbjct: 332 DPFLFQFNRLGIRVPTIAV--SPWIEKGTVVHGPNGSPFPSSEYEHSSIPATVKKL 385


>At3g46200.1 68416.m05001 MutT/nudix family protein similar to head
           organizer protein P17F11 GI:17976973 from [Xenopus
           laevis]; contains a NUDIX hydrolase domain IPR000086
          Length = 311

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 10  NDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGP 168
           N + GE+LN+ +T +M DS I E +   G +  S+L+  + +    +E  + P
Sbjct: 185 NVQTGEVLNKKVTQEMFDSIICEVVEETG-IPASSLSSPLFIGISRRELNVRP 236


>At4g37460.1 68417.m05302 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 883

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 345 FEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLMNR 518
           F++  CKR    N C + Y +   R  +K  K KL+ Q         N+L+ A L+ +
Sbjct: 608 FKEYWCKRLHPKNVCEKVYRQPPLRESLK--KGKLKKQDLAITKQKANILRFADLIGK 663


>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
           Helicase [Arabidopsis thaliana] GI:10944747
          Length = 606

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 315 QLSVEFFRKSFEQMICKRAEIMNKC 389
           Q+ +E+F +SF++MICK +  +N C
Sbjct: 578 QMLLEYFGESFDRMICKSS--LNPC 600


>At1g16060.2 68414.m01927 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 275

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 118 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 228
           TK ++ SPLV E  IGP++P   E+    +  P  I+
Sbjct: 203 TKLLKSSPLVAEEVIGPSTP--PEIAPPRRSFPEDIQ 237


>At1g16060.1 68414.m01926 ovule development protein, putative
           similar to ovule development protein AINTEGUMENTA
           (GI:1209099)[Arabidopsis thaliana]
          Length = 345

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 118 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 228
           TK ++ SPLV E  IGP++P   E+    +  P  I+
Sbjct: 273 TKLLKSSPLVAEEVIGPSTP--PEIAPPRRSFPEDIQ 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,584,811
Number of Sequences: 28952
Number of extensions: 265617
Number of successful extensions: 766
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)