Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0370
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             103   1e-22
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   32   0.37 
SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)               32   0.37 
SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)             30   1.9  
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)             30   1.9  
SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)             30   1.9  
SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)                    29   2.6  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.7  
SB_11931| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   5.9  
SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)           28   7.9  
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)             28   7.9  
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)              28   7.9  

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  103 bits (247), Expect = 1e-22
 Identities = 46/79 (58%), Positives = 55/79 (69%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKKXXXXXXXXXXXXXXXIVRCPT 199
           K NN+IPNGHFHKDWQR+VKTWF+QP R+ RR+  R  K               IVRCPT
Sbjct: 4   KRNNIIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPT 63

Query: 200 VRYHTKVRAGRGFTLREIR 256
            +Y+TKVRAGRGFTL E++
Sbjct: 64  FKYNTKVRAGRGFTLDELK 82



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +3

Query: 279 ARTIGSAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
           A TIG AVD RR+N+S ESLQ NVQR+KEY+++LI+FP K  K  +G++   +   A QL
Sbjct: 91  APTIGIAVDHRRKNRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQL 150

Query: 456 RGPLMPVQQPAPKSVARPSLKMKRTS 533
           +GP+MP+ Q +    ARP  + ++ S
Sbjct: 151 QGPVMPIPQESVPIKARPITEDEKKS 176


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 348 VQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 452
           + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 319 IMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


>SB_34101| Best HMM Match : K_tetra (HMM E-Value=3.5e-40)
          Length = 440

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTL 214
           +A++  T   YGD+    + GQ++GS C ++   V  LP   L
Sbjct: 363 YAIVTMTTTGYGDMTPETAIGQLMGSFCCIVGTLVIALPVPIL 405


>SB_16503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A++  T   YGD++    +G+I+GS+C +       LP   +V
Sbjct: 466 WAVVTMTTVGYGDMRPITVWGKIVGSLCAISGVLTIALPVPVIV 509


>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
          Length = 605

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTL 214
           +A+I  T   YGD+      GQI+GS+C +    +  LP   +
Sbjct: 370 WAIITMTTVGYGDMSPKTLSGQIIGSLCAICGVLIIGLPVSVI 412


>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
          Length = 583

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLP 226
           + ++  T   YGD+      G+I+GS+C LI   +  LP
Sbjct: 365 YTLVTMTTLGYGDIVPVTFLGKIIGSMCALIGVLLLALP 403


>SB_53498| Best HMM Match : Ion_trans (HMM E-Value=8.9e-32)
          Length = 294

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLP 226
           + ++  T   YGD+      G+I+GS+C LI   +  LP
Sbjct: 180 YTLVTMTTLGYGDITPVTFVGKIIGSMCALIGVLLLALP 218


>SB_3223| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 486

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A++  T   YGD+     +G+++GSIC +       LP   +V
Sbjct: 372 WAVVTMTTVGYGDMYPVTPWGKLVGSICAISGVLTIALPVPVIV 415


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 26.2 bits (55), Expect(2) = 4.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 272 SICPNDWKCC 301
           S C NDWKCC
Sbjct: 918 SDCTNDWKCC 927



 Score = 20.6 bits (41), Expect(2) = 4.7
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +2

Query: 260 QIEPSICPNDWK 295
           +I P  CP  WK
Sbjct: 890 EIRPGKCPKPWK 901


>SB_11931| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A++  T   YGDL     +G+++GS C L       LP   +V
Sbjct: 414 WALVTMTTVGYGDLVPKTLWGKLVGSCCALCGVLAIALPVPVIV 457


>SB_13958| Best HMM Match : K_tetra (HMM E-Value=7.00649e-45)
          Length = 623

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTLV 211
           + ++  T   YGD+      G+I+GS+C L    V  LP   +V
Sbjct: 355 YTIVTMTTLGYGDMVPTTVPGKIVGSLCSLSGVLVIALPVPVIV 398


>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
          Length = 946

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLP 226
           + ++  T   YGD+      G+ILG +C L+   V  LP
Sbjct: 249 YTIVTTTTLGYGDMVPLTVVGKILGGMCCLMGALVVSLP 287


>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
          Length = 256

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 342 FAMIQQTCCVYGDLQHFQSFGQILGSICGLISRRVNPLPARTLV 211
           +A++  T   YGD+     +G+I+G++C +       LP   +V
Sbjct: 145 WAVVTMTTVGYGDISPESFWGKIVGALCAISGVLTIALPVPVIV 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,529,654
Number of Sequences: 59808
Number of extensions: 380951
Number of successful extensions: 1109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)