Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0370
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)            90   1e-18
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    87   7e-18
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    87   7e-18
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ...    78   6e-15
At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    30   1.2  
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate...    29   2.1  
At5g12280.1 68418.m01444 hypothetical protein                          27   8.5  

>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
          Length = 206

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 2/199 (1%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKKXXXXXXXXXXXXXXXIVRCPT 199
           K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+  R KK               +V   T
Sbjct: 2   KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 200 VRYHTKVRAGRGFTLREIR-PQIEPSICPNDWKCCRSP*TQQVC*IIANQCSKNKGIQSA 376
           ++Y+ KVRAG+GFTL E++   I   + P            +    + +   + K  ++ 
Sbjct: 62  LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121

Query: 377 SYTVPERQKGAEG*GQ*RRT*AGYT-ATWSINASSTACS*ISCKTITEDEKNFKAYQYLR 553
               P R +  +         A  T         ++  + +    +T D K FKAY  +R
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIR 181

Query: 554 GARSIAKLVGIRAKRLKDA 610
             R+ A+  G RAKR  +A
Sbjct: 182 LERTNARHAGARAKRAAEA 200



 Score = 70.5 bits (165), Expect = 9e-13
 Identities = 33/67 (49%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
 Frame = +3

Query: 279 ARTIGSAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
           A TIG +VD RR+N+S+E LQ NVQR+K Y+A+L++FP + ++V  G++  EE   ATQ+
Sbjct: 89  APTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQV 148

Query: 456 RGPLMPV 476
           +G  MP+
Sbjct: 149 QGDYMPI 155


>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 39/79 (49%), Positives = 50/79 (63%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKKXXXXXXXXXXXXXXXIVRCPT 199
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R KK               +V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 200 VRYHTKVRAGRGFTLREIR 256
           ++Y+ KVR G+GFTL E++
Sbjct: 62  LKYNMKVRTGKGFTLEELK 80



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = +3

Query: 279 ARTIGSAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
           A TIG AVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  EE   ATQ+
Sbjct: 89  APTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQV 148

Query: 456 RGPLMPVQQPAP 491
           +G  +P+ +  P
Sbjct: 149 QGDYLPIVREKP 160



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 509 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 610
           +T + K+FKA+  +R  R+  +  G RAKR  +A
Sbjct: 167 LTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 39/79 (49%), Positives = 50/79 (63%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKKXXXXXXXXXXXXXXXIVRCPT 199
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+  R KK               +V   T
Sbjct: 2   KHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQT 61

Query: 200 VRYHTKVRAGRGFTLREIR 256
           ++Y+ KVR G+GFTL E++
Sbjct: 62  LKYNMKVRTGKGFTLEELK 80



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/72 (47%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
 Frame = +3

Query: 279 ARTIGSAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQL 455
           A TIG AVD RR+N+S+E LQ NVQR+K Y+ +L++FP + +KV  G++  EE   ATQ+
Sbjct: 89  APTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQV 148

Query: 456 RGPLMPVQQPAP 491
           +G  +P+ +  P
Sbjct: 149 QGDYLPIVREKP 160



 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 509 ITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDA 610
           +T + K+FKA+  +R  R+  +  G RAKR  +A
Sbjct: 167 LTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200


>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
           ribosomal protein L13 (BBC1), Arabidopsis thaliana,
           gb:X75162
          Length = 206

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 36/79 (45%), Positives = 47/79 (59%)
 Frame = +2

Query: 20  KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIKKXXXXXXXXXXXXXXXIVRCPT 199
           K NN+IPNGHF K W+ +VKT FNQPA + RR+  R  K               +V   T
Sbjct: 2   KHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQT 61

Query: 200 VRYHTKVRAGRGFTLREIR 256
           + Y+ KVRAG+GFTL E++
Sbjct: 62  LTYNMKVRAGKGFTLEELK 80



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
 Frame = +3

Query: 279 ARTIGSAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLK-GEANEEERKLATQL 455
           A TIG +VD  R+N+S+E  Q NVQR+K Y+A+L++FP+  + +K G++ ++E   ATQ+
Sbjct: 89  APTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQV 148

Query: 456 RGPLMPVQQPAPKSVARPSLKMKRTSKLINT*EEL 560
           +   MP+ +  P       +K+    KL N  +++
Sbjct: 149 QVDHMPIVREMP---TMELVKLTSDMKLFNAYDKI 180


>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +2

Query: 590 AKRLKDAAENPDDVTKAPTA*RSEA 664
           AK L DA E PD VT+AP A +S+A
Sbjct: 658 AKELVDAFELPDHVTRAPIAMQSDA 682


>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
           CDPK-related contains TIGRFAM TIGR01557: myb-like
           DNA-binding domain, SHAQKYF class; contains Pfam
           PF00249: Myb-like DNA-binding domain; similar to CDPK
           substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
           crystallinum].
          Length = 626

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 150 ATALAFFILFCFLRYRRAGWLNQV 79
           A  L FFI FCF  YR +G+L  V
Sbjct: 266 AVLLLFFICFCFSLYRTSGYLRIV 289


>At5g12280.1 68418.m01444 hypothetical protein
          Length = 419

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 324 SVESLQINVQRIKEYRARLILFPKGKKVLKGEA 422
           +V+SL  NV  +KE  +  I FP  K+ L+G+A
Sbjct: 362 TVQSLSENVASLKEKISGEIQFPTNKQKLRGKA 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,890,862
Number of Sequences: 28952
Number of extensions: 277689
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)