Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0369
         (716 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q32S48 Cluster: Toll-like receptor precursor; n=1; Eupr...    34   3.0  
UniRef50_O46094 Cluster: CG3573-PA; n=3; Sophophora|Rep: CG3573-...    34   4.0  
UniRef50_Q7PDS8 Cluster: TPR Domain, putative; n=1; Plasmodium y...    33   7.0  

>UniRef50_Q32S48 Cluster: Toll-like receptor precursor; n=1; Euprymna
            scolopes|Rep: Toll-like receptor precursor - Euprymna
            scolopes
          Length = 1191

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +2

Query: 59   VTIVYFNKTVF*MNNCRSVLRIVNNMFLCFNFGRLSFTYSRTPLIKKNHDWFSHMFAFLN 238
            V I Y   T+  +NN +  L +V+N F C  + R  F  +       NHD    +   L 
Sbjct: 1030 VDISYAQNTINSINNSKRTLMLVSNDFFCTEWFRYDFQIN-------NHDVLKALSDRLI 1082

Query: 239  *FEMRQSNKKEINVLYFFFSLSK 307
               M + +KK++N    F+S SK
Sbjct: 1083 VVLMEKIDKKKLNCDLMFYSRSK 1105


>UniRef50_O46094 Cluster: CG3573-PA; n=3; Sophophora|Rep: CG3573-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 850

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 152 FGRLSFTYSRTPLIKKNHDWFSHMFAFLN*FEMRQSNKKEINVLYFFFSLSK 307
           F  ++F+Y RTPL   N    + +FA  + F++RQ +K  I    F  S ++
Sbjct: 64  FAIIAFSYLRTPLSSANELIINKVFAIDHNFQLRQDSKSSITTQQFDLSTAE 115


>UniRef50_Q7PDS8 Cluster: TPR Domain, putative; n=1; Plasmodium
           yoelii yoelii|Rep: TPR Domain, putative - Plasmodium
           yoelii yoelii
          Length = 613

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 62  TIVYFNKTVF*MNNCRSVLRIVNNMFLCFNFGRLSFTYSRTPLIKKNHDW-FSHMF 226
           TI + N +   MN    +L+ +NN F C N   L   Y+   +IKK HD  F+ +F
Sbjct: 552 TIYWKNMSYLQMNKYNEILQNLNNSF-CLNNTSLLKLYNTARMIKKTHDTKFNSLF 606


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 640,936,793
Number of Sequences: 1657284
Number of extensions: 12142074
Number of successful extensions: 19180
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19175
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)