Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0369
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    29   0.50 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   4.7  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 10/38 (26%), Positives = 24/38 (63%)
 Frame = -2

Query: 691 MIQLDKIMRYIYIYNS*SFSG*SFLRIESPQWRVAIIY 578
           +++  +IM+++ I++     G SF+ +  P+W V ++Y
Sbjct: 130 VLEASEIMQHLQIFSLFFIEGGSFIDLNDPRWMVYLLY 167


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 391  CSEFGLRRLEIRPLGPF*VFSY--TSSLCD*AKHAWNRYLNYVK 516
            CSE G++ LE+ P+  F  F Y    ++   +   WN   +Y+K
Sbjct: 1105 CSESGIKSLELLPVCCFLRFMYYFLPTVFSLSGSYWNSIFDYIK 1148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,229
Number of Sequences: 5004
Number of extensions: 56501
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)