Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0367
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 160 2e-40
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 45 1e-05
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 38 0.001
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 35 0.016
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.021
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 33 0.037
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 31 0.15
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 31 0.15
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.15
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 31 0.15
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.15
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 31 0.26
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 31 0.26
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.34
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 30 0.45
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 30 0.45
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.60
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 29 1.0
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 1.0
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 28 1.4
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 1.8
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 2.4
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 3.2
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 3.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 4.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.6
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 5.6
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 5.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 26 5.6
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 26 5.6
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 7.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 7.4
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 26 7.4
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 26 7.4
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 26 7.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 9.7
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 9.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.7
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 9.7
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 9.7
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 160 bits (388), Expect = 2e-40
Identities = 76/141 (53%), Positives = 96/141 (68%)
Frame = +2
Query: 263 DGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIR 442
DG W TLVLLR+NRAAT V+WSP E+KFAVGSGAR+IS+CYFE+EN+WWVSKH+K+P+R
Sbjct: 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR 146
Query: 443 STVTSIDWHPNNILLVAGSADFKYESSLPISRISKISLDRMCGGSKLPLGQLLAEFSQFR 622
ST+ S+DWHPNN+LL AG AD K R + GS+LP + AE+
Sbjct: 147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPS-- 204
Query: 623 LQVAVGVHSVSFSADGNKVAW 685
VH+V FS GN +A+
Sbjct: 205 ---GGWVHAVGFSPSGNALAY 222
Score = 80.6 bits (190), Expect = 2e-16
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = +3
Query: 54 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 233
HA+N R++ + N+V +Y+++GN WK +HD V +DWAP +NRIVTCS D
Sbjct: 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 234 RNAYVWTKEMMG 269
RNAYV+ K G
Sbjct: 77 RNAYVYEKRPDG 88
Score = 36.3 bits (80), Expect = 0.005
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 21 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWA 197
TF D +TC W ++I + ++Y+K + WKQT L+ + + W+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 198 PNTNRIVTCS 227
PN ++ S
Sbjct: 110 PNEDKFAVGS 119
Score = 34.3 bits (75), Expect = 0.021
Identities = 18/80 (22%), Positives = 29/80 (36%)
Frame = +2
Query: 260 DDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPI 439
D W ++ TCV W+P N+ S R + Y ++ + W + +
Sbjct: 41 DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV-YEKRPDGTWKQTLVLLRL 99
Query: 440 RSTVTSIDWHPNNILLVAGS 499
T + W PN GS
Sbjct: 100 NRAATFVRWSPNEDKFAVGS 119
Score = 33.5 bits (73), Expect = 0.037
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHI-YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSV 230
W+ + + A + + Y ++ NDW + +L + LR ++ +DW PN +
Sbjct: 108 WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCA 166
Query: 231 DRNAYV 248
DR AYV
Sbjct: 167 DRKAYV 172
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 57 AWNK-DRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 233
AW +R +A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D
Sbjct: 340 AWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRD 399
Query: 234 RNAYVW 251
++ ++W
Sbjct: 400 KSVWIW 405
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 239
W+ + +N + ++ +G+DW T L H V + ++PN N + + D N
Sbjct: 431 WHPTEDLLVSGSYDNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGN 490
Query: 240 AYVWTK 257
++W K
Sbjct: 491 VFLWIK 496
Score = 32.7 bits (71), Expect = 0.064
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = +2
Query: 263 DGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIR 442
D W T L C+ WS N A S + + I + E++ + + +
Sbjct: 365 DDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSVWI-WEATEDDEFDCLAVLQEHT 423
Query: 443 STVTSIDWHPNNILLVAGSAD 505
V + WHP LLV+GS D
Sbjct: 424 QDVKVVTWHPTEDLLVSGSYD 444
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +3
Query: 45 ITCHAWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 221
+ C AW+ + + +A + V I++ E +++ L EH V + W P + +V+
Sbjct: 381 VKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVS 440
Query: 222 CSVDRNAYVW 251
S D + W
Sbjct: 441 GSYDNSICFW 450
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Frame = +3
Query: 21 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWK----------QTNNLVEHD 170
T ++ + + C A++ D S A ++ +H+Y N + Q ++L+ H
Sbjct: 344 TMHNTLSAVNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHT 403
Query: 171 LRVMGIDWAPNTNRIVTCSVDRNAYVWTKE 260
V G+ +P I++CS D +W+K+
Sbjct: 404 RPVFGVSISPQKEFILSCSEDGFTRLWSKD 433
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.7 bits (76), Expect = 0.016
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 81 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
+A S +N V +Y + K NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 549 VAASLLDNTVKVYYLDS--LKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 153 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
++ H +M + + P+T TCS DR W
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW 645
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.021
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 27 GDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT 206
G A C AW+ D + S + + ++ K +L H+ +V +DW+P+
Sbjct: 429 GHVAAVYQC-AWSTDSRLLVSSSQDTTLKVWDVRSK--KMKFDLPGHEDQVFAVDWSPDG 485
Query: 207 NRIVTCSVDRNAYVWT 254
R+ + D+ +W+
Sbjct: 486 QRVASGGADKAVRIWS 501
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 33.5 bits (73), Expect = 0.037
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +3
Query: 57 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 236
A++ +A S +++V IY+ + L EH V+ ++W+ + ++ + SVD+
Sbjct: 37 AFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDK 96
Query: 237 NAYVWTKEMMGNGQL 281
+A V+ + N Q+
Sbjct: 97 SAKVFDIQTGQNQQV 111
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 132 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTKEMMGNGQ 278
N+W + L H + WAP+ + + S D+N ++WTKE G Q
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQ 245
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 57 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 158
+W+ + +A S +N+V+++K+ N W+ N L
Sbjct: 262 SWSLSGNILAVSCGDNKVYLFKESQNKWQLLNEL 295
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/117 (17%), Positives = 44/117 (37%)
Frame = +3
Query: 81 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTKE 260
+A + + V ++++ G W + + H V + WAP+ + + V E
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
Query: 261 MMGNGQLLLFFCVSTEQRLA*NGLPWRTSLLSGQELD*YQFAILRRKIIGGCLSILR 431
+G + T N + W LSG + A ++ GC ++++
Sbjct: 130 FKDDGS--CDTRIFTAHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCDNLVK 184
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/81 (20%), Positives = 30/81 (37%)
Frame = +3
Query: 3 KMAQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVM 182
K + + AP T ++ +A N V I+ G D N + R+
Sbjct: 47 KQENCFQYNEHTAPTTVARFSPSGYYVASGDNQGNVRIWDCAGEDKILKNQVTAISGRIT 106
Query: 183 GIDWAPNTNRIVTCSVDRNAY 245
+DW ++ RI+ + Y
Sbjct: 107 DLDWDGDSQRIIAVGEGKERY 127
Score = 30.7 bits (66), Expect = 0.26
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +3
Query: 114 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTKEMMGNGQLLLFF 293
+Y +G Q + H + I W+P++++ VT S + +W G L+ +
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIWD---ANTGSLIREW 269
Query: 294 CVSTEQRLA*NGLPWRT 344
S +++L G W T
Sbjct: 270 LSSDKKQLV--GTVWPT 284
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +3
Query: 57 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 236
+WN + +A + + +HIY E K H L ++W + N +++ D
Sbjct: 529 SWNAKSTHLATASLDTNIHIYSVE-RPMKYIAMKNAHSLGATQVEWV-SENELLSTGSDA 586
Query: 237 NAYVWT 254
VW+
Sbjct: 587 AIKVWS 592
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = +3
Query: 84 AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
A + ++N ++ + G ++ +L H V + ++PN R + D YV+
Sbjct: 163 ATASDDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF 216
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.15
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +2
Query: 305 RAATCVKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRSTVTSIDWHPNNIL 484
R + VKW+ A S + I I FEK S K + V+SID++P L
Sbjct: 97 RGISQVKWATGSKYLASASDDKTIRIWDFEKR----CSVRCLKGHTNYVSSIDFNPLGTL 152
Query: 485 LVAGSAD 505
LV+GS D
Sbjct: 153 LVSGSWD 159
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 31.5 bits (68), Expect = 0.15
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = +3
Query: 30 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 209
D ITC A + D I ++ + I ++ + + H VMG+ TN
Sbjct: 206 DHVKEITCLAISNDGRWIVTGGLDHRIVI--RDSVTLEPQHCWKHHRDAVMGLAMRRGTN 263
Query: 210 RIVTCSVDRNAYVWTKEMM 266
+ +CS DR+ VW+ + M
Sbjct: 264 EMFSCSADRSIKVWSLDQM 282
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 31.5 bits (68), Expect = 0.15
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +3
Query: 45 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 224
+ C W+ D + V ++ N+ K H++ V + ++PN ++ VT
Sbjct: 126 VRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ---AHEMEVRDVAFSPNDSKFVTA 182
Query: 225 SVDRNAYVWTKEM 263
S D + VW M
Sbjct: 183 SDDGSLKVWNFHM 195
Score = 28.7 bits (61), Expect = 1.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 320 VKWSPMENKFAVGSGARLISICYFEKENNWWVSKHIKKPIRS-TVTSIDWHPNNILLVAG 496
V +SP ++KF S + + F ++ +K V ++DWHP+ LL +G
Sbjct: 170 VAFSPNDSKFVTASDDGSLKVWNFHMS-----TEELKLTGHGWDVKTVDWHPSKGLLASG 224
Query: 497 SAD 505
S D
Sbjct: 225 SKD 227
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 30.7 bits (66), Expect = 0.26
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 156 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
L+ H+ VM +DW P I++ S D + VW
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVW 295
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/66 (16%), Positives = 27/66 (40%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 239
WN + + + ++K++ W Q ++ H V G+ W P ++ D+
Sbjct: 334 WNPNGNCVVCWGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQT 393
Query: 240 AYVWTK 257
++ +
Sbjct: 394 TRLFAR 399
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 449 VTSIDWHPNNILLVAGSAD 505
V S+DWHP ++++ SAD
Sbjct: 271 VMSVDWHPTKEMILSSSAD 289
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 90 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 236
+P + + +Y E W Q L H L V I ++P+ I++ DR
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDR 600
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 30.7 bits (66), Expect = 0.26
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 57 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT--CS 227
AW D Q+A N+N V I+ + K T H+ V + W P +N + T +
Sbjct: 311 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNLLATGGGT 368
Query: 228 VDRNAYVW 251
+D+ + W
Sbjct: 369 MDKQIHFW 376
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +3
Query: 30 DSCAPITCHAWNKDRSQI----AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA 197
D+ + +T W+ +I F NN + Y G KQ + + HD RV+ +
Sbjct: 388 DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-KQVD-IPAHDTRVLYSALS 445
Query: 198 PNTNRIVTCSVDRNAYVW 251
P+ + T + D N W
Sbjct: 446 PDGRILSTAASDENLKFW 463
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 186 IDWAPNTNRIVTCSVDRNAYVWTKE 260
+DW+ N N +V +++RN YVW +
Sbjct: 186 LDWS-NLN-VVAVALERNVYVWNAD 208
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.34
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 120 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP 200
WN D SQ A N+N V ++K G+D +Q + + + V + + P
Sbjct: 330 WNHDGSQFASGGNDNRVCLFK--GSDLRQPLYVWQQNAAVKALSFCP 374
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 162 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 254
EH+L +G+ W+ N+ + S D+N YVW+
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWS 297
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.60
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 141 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
K+ L+ H V I W+P+ +++CS D++ +W
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW 282
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 28.7 bits (61), Expect = 1.0
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Frame = +3
Query: 42 PITCHAW--NKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPNTNR 212
P C W ++ R Q N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 170 PAFCVNWCPSRWREQYIAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGS 229
Query: 213 ----IVTCSVDRNAYVWTKEMM 266
I T D N ++ E +
Sbjct: 230 SYYLIATACKDGNVRIFKVETL 251
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 156 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 198 PNTNRIVTCSVDRNAYVWTKEM 263
P +N IVTCS D ++W +M
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDM 324
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 42 PITCHAWNKDRSQIAFSPNNNEVHIYK 122
P+ AW ++ +A N VHIYK
Sbjct: 510 PLNKIAWQPEKRNLACGGLNGNVHIYK 536
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 218
W++ Q+A N+N + ++ + + + EH V I W+P+ I+
Sbjct: 257 WDRSLGQLASGGNDNNLFVWDYRSS--RPLHKFEEHTAAVKAIGWSPHQRGIL 307
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 156 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 254
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/65 (21%), Positives = 27/65 (41%)
Frame = +3
Query: 57 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 236
A + D + + +V+++ E N+++ N +H +P+ I SVD
Sbjct: 66 ATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDG 125
Query: 237 NAYVW 251
VW
Sbjct: 126 RIAVW 130
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +3
Query: 51 CHAWNKDRSQIAFSPNNNEVH-----IYKKEGNDW-KQTNNLVEHD 170
CH+ + SQ+ SPN +E H + EGN+ + NN+V D
Sbjct: 66 CHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSD 111
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHIYK-KEGNDWKQTNNLVEHDLRVMGIDW-APNTNRIVTCSVD 233
WN I S + V I+ + G+ T E+ ++ G+++ R++TC++D
Sbjct: 374 WNYKNPHILASSHGRLVRIWDDRYGSAPLHTIKTSENITKINGLEFNRACETRLLTCAMD 433
Query: 234 RNAYVWTKE 260
R W E
Sbjct: 434 RTVKFWNYE 442
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 503 QQSQRRAKCYWDANQ*MSQSNEWA 432
++S + +WDAN +SQ N+W+
Sbjct: 126 EKSDSGEQFHWDANVTLSQENKWS 149
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +3
Query: 156 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTK 257
L H V G++W N N + + D VW K
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDK 403
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.6
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -2
Query: 167 VFHKVVCLLPVISFLLVYVNFIIVW 93
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 314 TCVKWSPMENKFAVGSGARLISICYF 391
TCV WSP A+G L+SI F
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSIYSF 393
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +3
Query: 45 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV-T 221
ITC W+K ++ ++ +NN + N + L H L V I + + + ++ T
Sbjct: 192 ITCMNWSKSNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQLAVRSIKSSNSAHDLLAT 251
Query: 222 CSVDRNAYVWTKE 260
S D + ++ E
Sbjct: 252 ASYDMTSRIFDPE 264
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +3
Query: 165 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 251
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 251 PDVSITVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLP 138
PD I R R+++ + I+PHHS+ + ++ +P
Sbjct: 472 PDSDICFTRRRSDSNRTWTVIDPHHSQSFDNDILAEIP 509
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 42 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 158
PI WN S++A S ++ V ++ + D+K T L
Sbjct: 26 PIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTEL 64
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 505 LQVRVFSAYIKDIEDQPGPNVWGL 576
LQ ++ Y D+E GPNV G+
Sbjct: 547 LQTDIWQLYCSDMERAQGPNVMGI 570
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 386 YFEKENNWWVSKHIKKPIRSTVTSID 463
YF+++N W + K KK ++ ++TS+D
Sbjct: 30 YFDEDNIWDLDK-FKKNLKVSITSLD 54
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 428 KKPIRSTVTSIDWHPNNILLVAGSAD 505
K P +V + WHPN +L G D
Sbjct: 296 KLPHSDSVLTGSWHPNGNILATGGQD 321
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 165 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTKEMMG 269
H V+ W PN N + T D A VW +G
Sbjct: 299 HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALG 333
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 195 APNTNRIVTCSVDRNAYVWTKEMM 266
+P+ + TCS D +W+ E M
Sbjct: 224 SPDVKHLATCSADATVNIWSTEDM 247
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 449 VTSIDWHPNNILLVAGSAD 505
V SI WHPNN +A + D
Sbjct: 216 VNSIAWHPNNATRLATAID 234
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +3
Query: 60 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 239
W+ D + + +N + +Y + + + +H V G+ W P IV+ S DR+
Sbjct: 136 WSVDSNFLIAGAMDNSLRLY--DAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +3
Query: 15 TLTFGDSCAPITCHAWNKDRSQIAFSPNNN 104
T+TFG H WN S + PN++
Sbjct: 6 TVTFGRKSNFCWTHFWNTQESYFVYDPNDH 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,619,596
Number of Sequences: 5004
Number of extensions: 80977
Number of successful extensions: 304
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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