Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0366
(529 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 148 6e-37
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 28 0.75
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 27 1.3
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 2.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 26 4.0
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 25 7.0
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 9.2
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 9.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 9.2
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 148 bits (358), Expect = 6e-37
Identities = 67/98 (68%), Positives = 83/98 (84%)
Frame = +2
Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
K + E L IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106
Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWG 505
+GH+GLG+KC+KEVATAIRGAII+ KLSI+P+RR YWG
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWG 144
Score = 58.4 bits (135), Expect = 6e-10
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +3
Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++KEWVPVTKLGRLV+ GKI +E IYL+SLP K
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 28.3 bits (60), Expect = 0.75
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 261 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 371
+SR+ I S+ +++L S R KH+P+ ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 191 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 307
R +++NR+T + LV T+ +FF P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -1
Query: 337 LFLYRHDLKNLIIQGRAEEEINDLEFFDGKENK*MLSSLSIFPSRTRRPSLVTGTHSF 164
L +Y L+NL+ QG+A E +N ++ + I S +RP + T SF
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIKRMSHNGPFPTQQTFLIVLSLCKRPKFYSYTKSF 418
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 4.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -1
Query: 331 LYRHDLKN--LIIQGRAEEEINDLEFFDGKENK*MLSSL 221
+ R +L N LI++ EEI+D +F D N +++SL
Sbjct: 846 IQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASL 884
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.0 bits (52), Expect = 7.0
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +2
Query: 266 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG--HIGLGVKCSKEVA- 436
E F G + E + ++P G TRF V D NG I G+ + E A
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENGKDKIVPGLYAAGEAAC 437
Query: 437 TAIRGAIILAKLSILPV 487
++ G L S+L +
Sbjct: 438 VSVHGGNRLGANSLLDI 454
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 9.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -1
Query: 523 VAFLSVTPVTSSDW*N*QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 344
++ ++VTP +SS + ++ +A + A+ HT N +V C+ +
Sbjct: 250 ISTVTVTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMA 308
Query: 343 TCLFLY 326
C+FLY
Sbjct: 309 LCIFLY 314
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 442 GSGDFLAALHTQTNMTVVVANGNKCLETCA 353
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 258 KNSRSLISSSARP*MMRFLRSCLYRNK 338
K SR+ S P MMRF+ C++ K
Sbjct: 38 KRSRNAQGFSLEPIMMRFIELCVHLRK 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,733
Number of Sequences: 5004
Number of extensions: 38472
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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