Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0366
         (529 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   171   7e-43
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   171   7e-43
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   171   7e-43
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   171   7e-43
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   171   7e-43
BT003459-1|AAO39462.1|  925|Drosophila melanogaster RH30917p pro...    29   5.2  
AE014298-780|AAF46066.2|  725|Drosophila melanogaster CG33080-PB...    29   5.2  
AE014298-779|AAF46068.2|  925|Drosophila melanogaster CG33080-PA...    29   5.2  

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  171 bits (415), Expect = 7e-43
 Identities = 83/100 (83%), Positives = 87/100 (87%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWGNR 511
           NGHIGLGVKCSKEVATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLP K
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  171 bits (415), Expect = 7e-43
 Identities = 83/100 (83%), Positives = 87/100 (87%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWGNR 511
           NGHIGLGVKCSKEVATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLP K
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  171 bits (415), Expect = 7e-43
 Identities = 83/100 (83%), Positives = 87/100 (87%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWGNR 511
           NGHIGLGVKCSKEVATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLP K
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  171 bits (415), Expect = 7e-43
 Identities = 83/100 (83%), Positives = 87/100 (87%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWGNR 511
           NGHIGLGVKCSKEVATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLP K
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  171 bits (415), Expect = 7e-43
 Identities = 83/100 (83%), Positives = 87/100 (87%)
 Frame = +2

Query: 212 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 391
           K +   E  L    IKEFEIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGDN
Sbjct: 57  KIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 116

Query: 392 NGHIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWGNR 511
           NGHIGLGVKCSKEVATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 117 NGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 156



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/36 (83%), Positives = 31/36 (86%)
 Frame = +3

Query: 153 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           KED KEWVPVTKLGRLVREGKI  LE IYL+SLP K
Sbjct: 37  KEDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>BT003459-1|AAO39462.1|  925|Drosophila melanogaster RH30917p
           protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 185 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 289
           Q  P   R+K R+T+++ +  F I  F II F +G
Sbjct: 233 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 267


>AE014298-780|AAF46066.2|  725|Drosophila melanogaster CG33080-PB,
           isoform B protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 185 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 289
           Q  P   R+K R+T+++ +  F I  F II F +G
Sbjct: 33  QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 67


>AE014298-779|AAF46068.2|  925|Drosophila melanogaster CG33080-PA,
           isoform A protein.
          Length = 925

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 185 QTRPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLG 289
           Q  P   R+K R+T+++ +  F I  F II F +G
Sbjct: 233 QAFPQLIRKKKRETKDYKIKIFVIIMFFIIIFLIG 267


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,440,239
Number of Sequences: 53049
Number of extensions: 464767
Number of successful extensions: 1966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)