Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0366
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   140   6e-34
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical...    28   4.8  
U41546-4|AAC48218.1|  150|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear recep...    27   8.3  
AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormo...    27   8.3  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  140 bits (339), Expect = 6e-34
 Identities = 68/86 (79%), Positives = 76/86 (88%)
 Frame = +2

Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
           IKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEV
Sbjct: 85  IKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEV 143

Query: 434 ATAIRGAIILAKLSILPVRRXYWGNR 511
           ATAIRGAI+ AKL+++PVRR YWGN+
Sbjct: 144 ATAIRGAIVAAKLAVVPVRRGYWGNK 169



 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 24/35 (68%), Positives = 26/35 (74%)
 Frame = +3

Query: 156 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
           E + EW PVTKLGRLV+E KI  LE IYL SLP K
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 376 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 290
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 376 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 290
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical
           protein Y54G2A.20 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 219 DKLESIYLFSLPSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRHLLPLATTTV 398
           D  +    F+LP +N  +       P  M  L+   ++   + D+ +VSR+ L L T TV
Sbjct: 266 DPADGFRHFTLPDENGLNFTLVVITPQHMENLKKYSHKMVLLDDTHNVSRYGLKLTTITV 325

Query: 399 I 401
           I
Sbjct: 326 I 326


>U41546-4|AAC48218.1|  150|Caenorhabditis elegans Hypothetical
           protein T25B6.3 protein.
          Length = 150

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 177 PVTKLGRLVREGKIDKLESIYLFSLPSKNSRSLISSSARP*MMRFLRSCLYRNKHVPDSA 356
           P   L   +R  K++ LES   F +PS++   L +         FL +C  +N      +
Sbjct: 63  PKNFLENYIRWEKVEFLESAKKFLVPSQSDHHLYNKYFFHLGHNFLSNCTVKNDKKWRES 122

Query: 357 HVSRH 371
           H  +H
Sbjct: 123 HFEKH 127


>AY305847-1|AAR11991.1|  461|Caenorhabditis elegans nuclear receptor
           NHR-121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 325 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 453
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


>AF099915-4|AAC68773.2|  461|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 121 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +1

Query: 325 CTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 453
           CT  NTCR  +  + IC   R  +    G E    Q  R C++ R
Sbjct: 58  CTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,395
Number of Sequences: 27780
Number of extensions: 227916
Number of successful extensions: 650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)