Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0366
(529 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 158 2e-39
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 157 3e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 156 8e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 156 8e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 156 8e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 156 8e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 48 5e-06
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 31 0.36
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 1.5
At3g63100.1 68416.m07087 glycine-rich protein 29 2.6
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.4
At3g01450.1 68416.m00069 expressed protein 28 3.4
At2g37930.1 68415.m04656 expressed protein 28 4.5
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 27 7.8
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote... 27 7.8
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 158 bits (383), Expect = 2e-39
Identities = 71/98 (72%), Positives = 84/98 (85%)
Frame = +2
Query: 218 RQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 397
+Q + L +KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 398 HIGLGVKCSKEVATAIRGAIILAKLSILPVRRXYWGNR 511
H+GLGVKCSKEVATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 130 HVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNK 167
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/34 (61%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++WVPVTKLGRLV G I ++E IYL SLP K
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 157 bits (382), Expect = 3e-39
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEV
Sbjct: 73 VKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEV 132
Query: 434 ATAIRGAIILAKLSILPVRRXYWGNR 511
ATAIRGAIILAKLS++P+RR YWGN+
Sbjct: 133 ATAIRGAIILAKLSVVPIRRGYWGNK 158
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/34 (70%), Positives = 30/34 (88%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++++WVPVTKLGRLV+EGKI K+E IYL SLP K
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 156 bits (379), Expect = 8e-39
Identities = 69/86 (80%), Positives = 80/86 (93%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSILPVRRXYWGNR 511
ATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 156 bits (379), Expect = 8e-39
Identities = 69/86 (80%), Positives = 80/86 (93%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSILPVRRXYWGNR 511
ATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 156 bits (379), Expect = 8e-39
Identities = 69/86 (80%), Positives = 80/86 (93%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSILPVRRXYWGNR 511
ATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 156 bits (379), Expect = 8e-39
Identities = 69/86 (80%), Positives = 80/86 (93%)
Frame = +2
Query: 254 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 433
+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEV
Sbjct: 81 VKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEV 140
Query: 434 ATAIRGAIILAKLSILPVRRXYWGNR 511
ATAIRGAIILAKLS++PVRR YWGN+
Sbjct: 141 ATAIRGAIILAKLSVVPVRRGYWGNK 166
Score = 51.6 bits (118), Expect = 3e-07
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +3
Query: 159 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPSK 260
++ +WVPVTKLGRLV + KI KLE IYL SLP K
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.6 bits (108), Expect = 5e-06
Identities = 20/62 (32%), Positives = 40/62 (64%)
Frame = +2
Query: 302 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSIL 481
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +I+
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 482 PV 487
V
Sbjct: 209 QV 210
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 31.5 bits (68), Expect = 0.36
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 348 PARVCFCTGMILRTSSFRDGPRKKSMISNSLMVKKTSK 235
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/75 (30%), Positives = 33/75 (44%)
Frame = -2
Query: 519 LSYLLPQ*XLRTGRIDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 340
L LL Q L++ + A R VA + H +P + P L P N R+R A
Sbjct: 163 LDRLLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKAS 221
Query: 339 VCFCTGMILRTSSFR 295
CF +G + R + R
Sbjct: 222 ACF-SGCVPRLEAAR 235
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -2
Query: 150 RAHDHGRDXDRVHEDRHGLYLHRVIRNRRENRHVH 46
R H HGRD R H HG + HR R R H H
Sbjct: 111 RDHRHGRD--RGHHRGHGHHHHRGHRRGRGRGHGH 143
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 368 AFVAIGDNNGHIGLGVKCSKE 430
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -2
Query: 519 LSYLLPQ*XLRTGRIDSLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 340
L LL Q L++ + D A A+ H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQ-DKRFVCEAAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 339 VCF 331
CF
Sbjct: 222 TCF 224
>At2g37930.1 68415.m04656 expressed protein
Length = 467
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 188 TRPSCSRRKNRQTREHLLVFFTI-KEFEIIDFFLGPSLNDEVLKIM 322
TRP +K +R H L+ FT+ K + F +G + N+ + M
Sbjct: 196 TRPPTKEKKQSSSRVHALLQFTLRKGINLFQFVVGDNSNNVLAATM 241
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 174 PTLSGLPCRAHDHGRDXDRV-HEDRHGLYLHRVIRNRRENRHVH 46
P S R HD GRD DR H DR + R+RRE H
Sbjct: 882 PRKSSTRERDHDLGRDRDRERHRDRDRQHDLNRDRDRREKSSSH 925
>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase ERECTA,
Arabidopsis thaliana, EMBL:AC004484
Length = 1048
Score = 27.1 bits (57), Expect = 7.8
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Frame = +2
Query: 278 FFLGPSLN--DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGH--------IGLGVKCSK 427
FFL SL E L P + R+ T +KA + +NGH +GL V+ K
Sbjct: 753 FFLDVSLKLTAEELSRAPAEVLGRSSHGTLYKATL----DNGHMLTVKWLRVGL-VRHKK 807
Query: 428 EVATAIRGAIILAKLSILPVRRXYWGNR 511
+ A + L +I+P+R YWG R
Sbjct: 808 DFAREAKKIGSLKHPNIVPLRAYYWGPR 835
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,667,707
Number of Sequences: 28952
Number of extensions: 213063
Number of successful extensions: 576
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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