Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0364
         (839 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    30   0.10 
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    26   1.6  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   8.7  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 29.9 bits (64), Expect = 0.10
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 770 RANWQGWQSRAFNEAFSRSVLPFLNAPXAIPLNQGIFG*SSQHVVSVPSRK 618
           R   +GW++ +FNE F + +L F +   A+  +Q +   +     ++P RK
Sbjct: 215 RVGGRGWKTESFNEDFFKELLAFGDFGEAVSASQIVIALTKASDGAMPRRK 265


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 455 ARFHPRCQTAHRRSKQNGSTEPPYS 529
           ARF P   T+HR S  N S+  P S
Sbjct: 344 ARFDPSALTSHRSSSANCSSAAPKS 368


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 518 PPYSEPRFEEIKKEVSSYIKKIGYNPAAVAF 610
           PP+S      +KK+   Y+++   N +A  F
Sbjct: 333 PPWSNRTLRNLKKDRMKYLRRYRLNRSAFNF 363


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,408
Number of Sequences: 2352
Number of extensions: 18346
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)