Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0362
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45260.1 68415.m05634 expressed protein contains Pfam profile...    29   2.4  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   4.2  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    27   7.4  
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR...    27   7.4  
At4g33320.1 68417.m04739 expressed protein contains Pfam profile...    27   9.7  
At1g61095.1 68414.m06881 expressed protein                             27   9.7  

>At2g45260.1 68415.m05634 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 425

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 152 FP*TFTEIYFSKYQQKAEAKHNFSQ*ILLYYVSYSLKLQSA 274
           FP   TE+Y S Y+  A+A H+FS+ ++    +    L SA
Sbjct: 179 FPDLTTELYVSTYEAAAKAVHDFSKPLINMMKAAGWDLDSA 219


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 293 YRRKTSQTILIISMNIHILPYNFXHR*F 376
           Y  K SQTI  I   +HILP N   R F
Sbjct: 602 YMLKPSQTITYIKREVHILPNNTRSRPF 629


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 147 HFFHKHLQKFTFQN--INRKLKRNITLVSEFY--CIMLVTH*NFSLXTYSVTVTGGRRHK 314
           HF H+H+ +F +Q+  I  + +R    V  FY     + TH +F L      +   +RH+
Sbjct: 264 HFSHEHILRFIYQDVLIRDENQRCYACVLPFYYDACYICTHCDFILHETCANLPRTKRHE 323


>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 376 FSNNEFSLSFKHCITINQIVTNCV-HTVTSHLS 471
           F+N E SL F +C  +NQ   + + HT TS  +
Sbjct: 852 FNNPEISLYFPNCFKLNQEARDLIMHTSTSRFA 884


>At4g33320.1 68417.m04739 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 292

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 152 FP*TFTEIYFSKYQQKAEAKHNFSQ*ILLYYVSYSLKLQSA 274
           FP   TE++ S Y+  A+A H+FS+ ++    +    L SA
Sbjct: 156 FPDLTTELFVSTYEVAAKAVHDFSKPLINMMKAAGWDLDSA 196


>At1g61095.1 68414.m06881 expressed protein
          Length = 125

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 367 QIIFSNNEFSLSFKHCITINQIVTNCVHTVTSHL 468
           ++I + NEF   F++C T N+ V + V    S++
Sbjct: 27  EVIRAMNEFMFCFENCYTENETVNHIVQKFPSYV 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,345,331
Number of Sequences: 28952
Number of extensions: 148772
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)