Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0361
         (826 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)               66   3e-11
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)               60   2e-09
SB_12555| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_38994| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 467

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 27/81 (33%), Positives = 47/81 (58%)
 Frame = +1

Query: 10  QKERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMATTIHDRREFARFEKERMMAKWDT 189
           Q++++CP+  P                    ++ K+  ++ DR E+ +FE++RM +KW  
Sbjct: 387 QEKQDCPEPAPILAIVLGVVGGILLIGLLLLLIGKIMVSMVDRIEYKKFERDRMRSKWHR 446

Query: 190 GXNPIYKQATSTFKNPTYAGK 252
             NP+YK+A +TF+NPTYAG+
Sbjct: 447 EKNPLYKEAKTTFENPTYAGR 467


>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 722

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 27/63 (42%), Positives = 34/63 (53%)
 Frame = +1

Query: 1   IRAQKERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMATTIHDRREFARFEKERMMAK 180
           I  QKER+CP++                      ++WK+  TI DRREFA+FEKER  AK
Sbjct: 636 IYVQKERDCPEEAEALAVILGVVGGVLGVGLALLLIWKLLATIQDRREFAKFEKERQNAK 695

Query: 181 WDT 189
           WDT
Sbjct: 696 WDT 698


>SB_12555| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +1

Query: 133 DRREFARFEKERMMAKWDT 189
           DRREFA+FEKER  AKWDT
Sbjct: 91  DRREFAKFEKERSQAKWDT 109


>SB_7506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +1

Query: 133 DRREFARFEKERMMAKWDT 189
           DRREFA+FEKER  AKWDT
Sbjct: 168 DRREFAKFEKERSQAKWDT 186


>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 119 PPPYTTDASSHASKRNV*WPNGIRAXIRFTSKXR 220
           PP  TT   S + K  + WPNG  A  R  SK +
Sbjct: 2   PPDSTTSPDSPSKKSALKWPNGDTAFSRRPSKKK 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,222,564
Number of Sequences: 59808
Number of extensions: 420456
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)