Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0361
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    93   2e-19
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    93   2e-19

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 40/81 (49%), Positives = 49/81 (60%)
 Frame = +1

Query: 10  QKERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMATTIHDRREFARFEKERMMAKWDT 189
           +K ++CP  VP                    +LWK+ T +HDR E+A F  ER+MAKWDT
Sbjct: 727 RKHKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSEYATFNNERLMAKWDT 786

Query: 190 GXNPIYKQATSTFKNPTYAGK 252
             NPIYKQAT+TFKNP YAGK
Sbjct: 787 NENPIYKQATTTFKNPVYAGK 807


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 40/81 (49%), Positives = 49/81 (60%)
 Frame = +1

Query: 10  QKERECPKKVPXXXXXXXXXXXXXXXXXXXXMLWKMATTIHDRREFARFEKERMMAKWDT 189
           +K ++CP  VP                    +LWK+ T +HDR E+A F  ER+MAKWDT
Sbjct: 727 RKHKDCPPPVPVLAIVLGVIAGIVILGILLLLLWKLLTVLHDRSEYATFNNERLMAKWDT 786

Query: 190 GXNPIYKQATSTFKNPTYAGK 252
             NPIYKQAT+TFKNP YAGK
Sbjct: 787 NENPIYKQATTTFKNPVYAGK 807


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,376
Number of Sequences: 27780
Number of extensions: 320368
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)