Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0361
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33050.1 68415.m04053 leucine-rich repeat family protein cont...    29   2.8  
At2g32680.1 68415.m03995 disease resistance family protein conta...    28   6.5  
At2g33020.1 68415.m04047 leucine-rich repeat family protein cont...    28   8.7  

>At2g33050.1 68415.m04053 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 800

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 141 RVRTLRKGTYDGQMGYGRXSDLQASXVDVQESNLRRKIXCAFXNCSFVXYVLIXNDRM 314
           +V  LRK + +G +     S  +   +DV  + L  K+  +  NCS + ++ + N+R+
Sbjct: 427 KVVNLRKNSLEGSIPDEFHSGAKTQTLDVGYNRLTGKLPKSLLNCSSLRFLSVDNNRI 484


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 153 LRKGTYDGQMGYGRXSDLQASXVDVQESNLRRKIXCAFXNCSFVXYVLIXNDRM 314
           LR    +G +            +DV  + L  K+  +F NCS + ++ + N+R+
Sbjct: 535 LRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRI 588


>At2g33020.1 68415.m04047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 864

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 153 LRKGTYDGQMGYGRXSDLQASXVDVQESNLRRKIXCAFXNCSFVXYVLIXNDRM 314
           LRK   +G +     +D     +DV  + L  K+  +  NCS + ++ + N+R+
Sbjct: 522 LRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRV 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,481,169
Number of Sequences: 28952
Number of extensions: 296144
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)