Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0360
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   2.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   2.9  
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    25   3.9  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   5.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   5.1  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    24   6.8  
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    24   6.8  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   9.0  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    24   9.0  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    24   9.0  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    24   9.0  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    24   9.0  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    24   9.0  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 263 SLKNVHLILSLHNNDMSSIESVLQG*IQALKKL 165
           ++KN+  IL  H+N + S+E+VL    +  KKL
Sbjct: 236 AIKNLPKILKKHDNAVRSLEAVLAKFFKNPKKL 268


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 375 LQIGGFCFL*SQCVQLXGFGKQH*QYFXGWCIITMKXF 262
           L +   C+L  +      +GK    YF  WC I +  F
Sbjct: 114 LNVPAVCYLTYKDALFKDYGKDEWVYFGVWCAICLMIF 151


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 38  TDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLV 184
           T+   I KQF + S+  E   +A   +FIN     ECI++ Q     +V
Sbjct: 7   TNTSSIVKQFEKSSIKHETETIAFAKQFIN-----ECIREFQEQKDNVV 50


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -2

Query: 260 LKNVHLILSLHNNDM-SSIE 204
           L ++HL+L  +NND+ SSIE
Sbjct: 51  LNHIHLLLGNYNNDLASSIE 70


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 365 EVFAFCDHNACSYXVLVSNTD 303
           E FA+ D + C   VL +NTD
Sbjct: 267 EYFAYVDQDPCHIRVLNANTD 287


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 190 DRYKL*RNWLFLLN-TFW*VHIIN 122
           D YKL  NW F L+  FW +H+I+
Sbjct: 301 DAYKLIYNWQFTLSLRFW-LHVIS 323


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 294 RNIVSVAYQNXITAR 338
           RN++SVAY+N I AR
Sbjct: 43  RNLLSVAYKNIIGAR 57


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 294 RNIVSVAYQNXITAR 338
           RN++SVAY+N I AR
Sbjct: 44  RNLLSVAYKNVIGAR 58


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +2

Query: 71  RLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVKTVSNE 250
           R +L K+N     K +     ++P+   Q  PVSS       T     S H   + +SN+
Sbjct: 40  RSALEKKNRKSKSKPKVTITSDTPKVSSQHSPVSSAYTGDSTTDLDSKSGHSSSQKLSNK 99


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 86  YPNLTYQIAYKFGHCQCNSN 27
           YP   Y++ Y+  HC  NSN
Sbjct: 499 YPYNDYRV-YRMSHCSSNSN 517


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 11  RNNNRDLNCTDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPE 145
           RN+ R +N T +G  Y Q G+       Y  ++     N+ NSP+
Sbjct: 323 RNDGR-INRTSHGLRYSQGGQSKYWISRYDQSRVRLINNSQNSPQ 366


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 143 ECIQQKQPVSSKLVSIPATQTQYCSCHYCVKTVSNEHF 256
           EC+  K+P  + L+ I  T+    + ++C  T +   F
Sbjct: 757 ECVDPKEPYFNTLLRILTTRCMLSAEYFCSGTFAPPDF 794


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 374 YKLEVFAFCDHNACSYXVLVSNTDNIS 294
           Y  E+  FC+    SY  +  N DNI+
Sbjct: 280 YLKELQEFCEQKDLSYTTVKDNWDNIT 306


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 148 YSAKTASFFKACIY 189
           Y + TAS F+AC+Y
Sbjct: 27  YKSGTASLFEACVY 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,073
Number of Sequences: 5004
Number of extensions: 25659
Number of successful extensions: 82
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)