Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0360
(375 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 28 2.1
SB_56328| Best HMM Match : NHL (HMM E-Value=0.082) 27 5.0
SB_50210| Best HMM Match : I-set (HMM E-Value=0.11) 27 5.0
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 27 5.0
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 27 5.0
SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_57166| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-25) 26 8.7
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 125 NNMNSPECIQQKQPVSSKLVSIPAT 199
+++ SP+C+QQ+QP +S ++P T
Sbjct: 1611 DSITSPDCLQQEQPSTSDRSTLPET 1635
>SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 38 TDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPAT-QTQYC 214
+DN I + N P +GE +N N PE +Q Q S +IP T Q ++
Sbjct: 92 SDNSNILETLQGEHSDNSNIPEGLQGEHSDNSNIPETLQALQGEHSDNSNIPETLQGEHS 151
Query: 215 SCHYCVKTVSNEH 253
+ + EH
Sbjct: 152 DNSNIPEALQGEH 164
Score = 27.5 bits (58), Expect = 3.7
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 38 TDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCS 217
+DN I + N P A +GE +N N E +Q + +S + + Q ++
Sbjct: 22 SDNSNIPETLNGEHSDNSNIPEALQGEHSDNSNILETLQGEHSDNSNI--LETLQGEHSD 79
Query: 218 CHYCVKTVSNEHF*EXNFI 274
+KT++ EH N +
Sbjct: 80 NSNILKTLNGEHSDNSNIL 98
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 107 KKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVKT-VSNE 250
KK + IN + PE Q+K VSS V+ TQT KT V NE
Sbjct: 1707 KKSKDINTLVHPEMKQEKMSVSSARVTKSITQTNNSVKETVPKTIVENE 1755
>SB_56328| Best HMM Match : NHL (HMM E-Value=0.082)
Length = 454
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 17 NNRDLNCTDNGQIYKQFGRLSLGKENYP 100
N DL+ D+G IY G SLG ++P
Sbjct: 230 NILDLDTNDSGHIYTLIGSSSLGVNSHP 257
>SB_50210| Best HMM Match : I-set (HMM E-Value=0.11)
Length = 348
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 173 SKLVSIPATQTQYCSCHYCVKTVSNEHF-*EXNFIVIMHQPKKYCQC 310
S + S+PA +YC C V V + + + + KYC+C
Sbjct: 55 SSIASVPAMSVKYCECARNVSQVLQVYAQCQSSIASVPAMSVKYCEC 101
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 134 NSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVKTVSNE-HF*EXNFIVIMHQPKKYCQC 310
N + +Q S + S+PA +YC C V V + + + KYC+C
Sbjct: 73 NVSQVLQVYAQCQSSIASVPAMSVKYCECTRNVSQVLRVCAQCQSSIASVPAMSVKYCKC 132
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 27.1 bits (57), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 83 PNLTYQIAYKFGHCQCNSNPYYYCV 9
PN Y I +KFGH Q N ++ V
Sbjct: 961 PNQLYYILFKFGHSQLNVPAHHVTV 985
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 173 SKLVSIPATQTQYCSCHYCVKTVSNEHF-*EXNFIVIMHQPKKYCQC 310
S + S+PA +YC C V V + + + + KYC+C
Sbjct: 1601 SSIASVPAMSVKYCECARNVSQVLQVYAQCQSSIASVPAMSVKYCEC 1647
Score = 26.2 bits (55), Expect = 8.7
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +2
Query: 134 NSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVKTVSNE-HF*EXNFIVIMHQPKKYCQC 310
N + +Q S + S+PA +YC C V V + + + KYC+C
Sbjct: 1619 NVSQVLQVYAQCQSSIASVPAMSVKYCECTRNVSQVLRVCAQCQSSIASVPAMSVKYCKC 1678
>SB_47708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 104 LKDNFLYPNLTYQIAYKFGH 45
LK N L PN+TY++ ++ H
Sbjct: 377 LKANVLTPNITYRVVFEASH 396
>SB_57166| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-25)
Length = 382
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 83 PNLTYQIAYKFGHCQCNSNPYYYCV 9
PN Y Y FG + N+N +Y+ +
Sbjct: 272 PNQVYYALYNFGAWELNNNVHYWTI 296
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,056,277
Number of Sequences: 59808
Number of extensions: 188139
Number of successful extensions: 373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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