Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0360
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    29   0.82 
U53333-10|AAA96163.1|  140|Caenorhabditis elegans Hypothetical p...    29   1.1  
AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical ...    27   4.4  
U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,...    27   5.8  
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical...    27   5.8  
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ...    27   5.8  
U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical pr...    26   7.6  
U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical pr...    26   7.6  

>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 122 INNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVKTVSNE 250
           + N+ SPE I+   P+    V+ P+T     S  Y  +T   E
Sbjct: 221 LENLKSPEDIKSPPPIKKNFVATPSTSKSTASYSYSRETPKRE 263


>U53333-10|AAA96163.1|  140|Caenorhabditis elegans Hypothetical
           protein F36A4.2 protein.
          Length = 140

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 86  YPNLTYQIAYKFGHCQCNSNPYYYCV 9
           +P + Y+I YKF H  C ++   YCV
Sbjct: 73  FPTMDYEIFYKFNH-NCTADGKTYCV 97


>AF068721-4|AAC19260.1|  298|Caenorhabditis elegans Hypothetical
           protein ZK1055.2 protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 177 FEET-GCFC*IHSGEFILLINSPF 109
           F ET  C+C IH+ EF+L +++ F
Sbjct: 7   FSETVRCYCKIHNYEFVLAVDTDF 30


>U41544-2|AAA83184.1|  436|Caenorhabditis elegans Dehydrogenases,
           short chain protein28 protein.
          Length = 436

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 50  QIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSI 190
           Q YK  G++        +AK    I NMN  E I      S++LVSI
Sbjct: 246 QYYKSKGKVISHASADDIAKNWSTITNMNGAEYIGTITEQSARLVSI 292


>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
            protein Y18D10A.13 protein.
          Length = 2417

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 282  CTNXRNIVSVAYQNXITARIVI 347
            C N  N +SVAY+N  T+ +V+
Sbjct: 1535 CKNMENAMSVAYENPPTSDVVV 1556


>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
            protein protein.
          Length = 2417

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 282  CTNXRNIVSVAYQNXITARIVI 347
            C N  N +SVAY+N  T+ +V+
Sbjct: 1535 CKNMENAMSVAYENPPTSDVVV 1556


>U46753-6|AAO21474.1|  740|Caenorhabditis elegans Hypothetical
           protein C34F11.3a protein.
          Length = 740

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   IRRNNNRDLNCTDNGQIYKQFGRLSLGKENY 97
           +RRN      C D+G I +QF  +++ KE +
Sbjct: 202 LRRNRGVTEICNDDGSIDQQFKNVNVTKEEF 232


>U46753-5|ABB88235.1|  803|Caenorhabditis elegans Hypothetical
           protein C34F11.3c protein.
          Length = 803

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   IRRNNNRDLNCTDNGQIYKQFGRLSLGKENY 97
           +RRN      C D+G I +QF  +++ KE +
Sbjct: 265 LRRNRGVTEICNDDGSIDQQFKNVNVTKEEF 295


>U46753-4|AAO21475.1|  764|Caenorhabditis elegans Hypothetical
           protein C34F11.3b protein.
          Length = 764

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   IRRNNNRDLNCTDNGQIYKQFGRLSLGKENY 97
           +RRN      C D+G I +QF  +++ KE +
Sbjct: 226 LRRNRGVTEICNDDGSIDQQFKNVNVTKEEF 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,676,834
Number of Sequences: 27780
Number of extensions: 145692
Number of successful extensions: 463
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)