Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0360
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   0.51 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   1.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 0.51
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 358 LLFVITMRAVXWFW*AT 308
           L+FV + R   WFW AT
Sbjct: 19  LIFVTSHRPAWWFWTAT 35


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 320 KPXNCTHCDHK 352
           KP +C+HCD +
Sbjct: 36  KPYHCSHCDRQ 46


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/39 (28%), Positives = 14/39 (35%)
 Frame = +2

Query: 197 TQTQYCSCHYCVKTVSNEHF*EXNFIVIMHQPKKYCQCC 313
           T T  C CH C K  S     + +      +    CQ C
Sbjct: 38  THTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHC 76


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -2

Query: 374 YKLEVFAFCDHN 339
           Y+L+++ FCD++
Sbjct: 38  YRLKLYLFCDYD 49


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 260 LKNVHLILSLHNNDMSSIESVL 195
           L+N  L+  +HN   +++++VL
Sbjct: 353 LRNTELVERMHNKLRNALQTVL 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,526
Number of Sequences: 438
Number of extensions: 1785
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)