Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0360
(375 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27980.1 68415.m03391 expressed protein 29 1.3
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim... 28 2.3
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 27 4.1
At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138... 27 4.1
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 27 5.4
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g... 27 5.4
At1g53130.1 68414.m06016 stigma-specific Stig1 family protein si... 27 5.4
At5g19580.1 68418.m02331 glyoxal oxidase-related contains simila... 26 7.1
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p... 26 7.1
At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ... 26 9.4
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ... 26 9.4
At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein ... 26 9.4
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ... 26 9.4
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 28.7 bits (61), Expect = 1.3
Identities = 23/76 (30%), Positives = 34/76 (44%)
Frame = +2
Query: 53 IYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCV 232
IY G +SL + + L+ F + N C + V + L S+P+ + SC YCV
Sbjct: 648 IYTTNG-VSLHELSVALSMDQRFSIHENDDLCSICRDGVCASLPSLPSERW---SCKYCV 703
Query: 233 KTVSNEHF*EXNFIVI 280
V E F + N I
Sbjct: 704 NMVEREKFVDSNLNAI 719
>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
similar to similar to PIR|T05180|T05180 S-receptor
kinase ARK3 precursor - [Arabidopsis thaliana]
Length = 843
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 71 YQIAYKFGHCQCNSNPYYYCV 9
Y++ FG+C NS P YC+
Sbjct: 293 YKVCGNFGYCDSNSLPNCYCI 313
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 80 LGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVK 235
LGK + + NS C + K+ + S LVS+ Q+ SCH+ ++
Sbjct: 269 LGKNELQFSVNRGRMEESNSLGCQEHKETIES-LVSVLPPQSGAVSCHFLLR 319
>At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as 'axi
1 protein from Nicotiana tabacum -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 573
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 20 NRDLNCTDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECI 151
N L +D +I K R SLG+ ++K G+ + PEC+
Sbjct: 517 NSSLPESDFNRIVKDLHRESLGQPELRMSKAGKDVTKHPVPECM 560
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 20 NRDLNCTDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECI 151
N L T+ ++ K+ R SLG+ ++K G + PEC+
Sbjct: 528 NSSLTETEFEKMIKKLHRQSLGQPELRISKAGRDVTKYPVPECM 571
>At1g69830.1 68414.m08034 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
(1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
alpha-amylase [Malus x domestica] GI:7532799; contains
Pfam profile PF00128: Alpha amylase, catalytic domain
Length = 887
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -2
Query: 260 LKNVHLILSLHNNDMSSIESVLQG*IQALKKLAVFAEYILVSS 132
++N+ + +S H N ++++ V + +Q ++KLA A I S+
Sbjct: 424 IRNLAIDISSHKNQKTNVKEVQENILQEIEKLAAEAYSIFRST 466
>At1g53130.1 68414.m06016 stigma-specific Stig1 family protein
similar to stigma-specific protein STIG1 [Nicotiana
tabacum] GI:496647; contains Pfam profile PF04885:
Stigma-specific protein, Stig1
Length = 168
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 278 IMHQPKKYCQCCLPKPXNCTHCDHK 352
++H KK+C+ L NC C HK
Sbjct: 101 LLHCCKKHCRNVLGDRNNCGRCGHK 125
>At5g19580.1 68418.m02331 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 594
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 2 FIRRNNNRDLNCTDNGQIYKQFGRLSLGKENYP 100
FI NN L Q+ K+F +L G NYP
Sbjct: 273 FIFANNRSILLSPKTNQVIKEFPQLPGGARNYP 305
>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
putative similar to AOP1 [Arabidopsis
lyrata][GI:16118889]; contains Pfam profile PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 317
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 294 RNIVSVAYQNXITARIVITKSKN 362
+NIV++ YQN + V TK KN
Sbjct: 193 KNIVTILYQNHVEGLEVQTKDKN 215
>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 407
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +2
Query: 296 KYCQCC-LPKPXNCTHC 343
KYC C L +P C+HC
Sbjct: 136 KYCDTCMLYRPPRCSHC 152
>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 410
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +2
Query: 296 KYCQCC-LPKPXNCTHC 343
KYC C L +P C+HC
Sbjct: 147 KYCDTCMLYRPPRCSHC 163
>At4g24630.1 68417.m03527 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 374
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +2
Query: 296 KYCQCC-LPKPXNCTHC 343
KYC C L +P C+HC
Sbjct: 136 KYCDTCMLYRPPRCSHC 152
>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 443
Score = 25.8 bits (54), Expect = 9.4
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +2
Query: 296 KYCQCC-LPKPXNCTHC 343
KYC C L +P C+HC
Sbjct: 149 KYCDTCMLYRPPRCSHC 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,962,324
Number of Sequences: 28952
Number of extensions: 123409
Number of successful extensions: 263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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