Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0359
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    28   1.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.5  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    26   5.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   7.8  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = -3

Query: 668 LMSSIW*HLLGFRTLWSFFC-GIYEFIYFLLQQLKL-FILMFYNFE*ICNSWFTFPLSTL 495
           ++ S+W H L F   +SFFC GI      ++  + + F L   N+    N W+   ++  
Sbjct: 508 ILDSLWFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENY----NWWWRSFITPG 563

Query: 494 FCGTISVFVGMAFSSYLFIAKVF*STASATV 402
           FCG I VF+   FS + +  K+  S+ +  V
Sbjct: 564 FCG-IYVFI---FSVFYWFFKISSSSLATAV 590


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 312 ATLTIFLFWCIITMKFFSQKC 250
           A+LT+F+ WC + +  F+Q C
Sbjct: 501 ASLTLFVNWCWVVVLAFTQIC 521


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 463 IPTNTEIVPQNNVLKGNVNQLLQIYSKL 546
           IPT  EI+   +  +G+++QL  +YS L
Sbjct: 169 IPTKEEILSGLDAFRGDISQLPPLYSAL 196


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 263 SLKNVHLILSLHNNDMSSIESVLQG*IQALKKL 165
           ++KN+  IL  H+N + S+E+VL    +  KKL
Sbjct: 236 AIKNLPKILKKHDNAVRSLEAVLAKFFKNPKKL 268


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 295 KYCQCCLPKPNNCTHCDHKKQKPPICNFISEQSGNCTVADAVDQKTLAIK-RYEENAIPT 471
           ++C CC  K N   +     QK  +C    +Q+   +     D K +AI+ + E++   T
Sbjct: 235 QHCYCCGNKFNESYYQSQTAQKYNVCISCYQQNRFPSPTTIADYKEVAIQNKIEDDDTWT 294

Query: 472 NTEIV 486
             E+V
Sbjct: 295 AQELV 299


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 319 KPNNCTHCDHKKQKPPICNFISEQS 393
           KP N +  +H K KP I + I E +
Sbjct: 101 KPKNISTLEHDKSKPVISSLIDEDA 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,426
Number of Sequences: 5004
Number of extensions: 67378
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)