Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0359
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     30   1.5  
11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103           30   2.0  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    30   2.0  
01_06_1631 - 38760452-38760466,38760696-38760788,38760838-38761539     29   2.7  
12_02_0490 + 19639226-19639228,19639718-19640133,19640793-196408...    29   4.7  
08_02_0282 - 15274413-15274465,15274564-15275245                       28   6.2  
07_01_1145 - 10742757-10743085,10744784-10744865                       28   6.2  
03_06_0396 - 33621471-33622031                                         28   6.2  
01_06_1067 + 34258036-34258051,34264808-34265679                       28   6.2  

>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 286 PKKKYCQCCLPKPNNCTHCDHKK--QKPPIC 372
           PK K C C  PKP  C HC+  K  +KPP C
Sbjct: 116 PKPKPCHCEKPKP--C-HCEKPKPCEKPPPC 143


>11_02_0055 - 7819391-7820098,7820202-7820534,7820930-7821103
          Length = 404

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 558 NEQLQLLQEKVDKFIYATEKTPQCSEPQEMLPN 656
           +E + ++ +K+DKFI A+ K  +  E Q+ L N
Sbjct: 330 SEAISVIDQKLDKFIEASSKAEKIGEVQQSLAN 362


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 343 DHKKQKPPICNFISEQSGNCTVADAVDQKTLAIKRYEENAIPTN 474
           DH   K P  N  + +SG C V  A D+ + +  +  +N +  N
Sbjct: 191 DHNVTKSPGSNIPAVESGRCVVNSAPDEPSSSFSKKSQNDVQQN 234


>01_06_1631 - 38760452-38760466,38760696-38760788,38760838-38761539
          Length = 269

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = +1

Query: 286 PKKKYCQCCLPKPNNCTH----CDHKKQKPPICNFISEQSGNCTVADAVDQKTLAIKRYE 453
           P    C  C  KP +CTH    CD+  +   I    + Q G C + D     T AI   +
Sbjct: 207 PHSDCCNLCSRKPEDCTHLFTKCDYTVRDWMIS---ASQLGGCRLDDVFGNATEAISTGD 263

Query: 454 EN 459
            N
Sbjct: 264 AN 265


>12_02_0490 +
           19639226-19639228,19639718-19640133,19640793-19640846,
           19640983-19641045,19641122-19641365,19641634-19641706,
           19641911-19641939
          Length = 293

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +1

Query: 211 LLMSLLCKDSIK*TFLREKFHCYNAPKKKYCQCCLPKPNNCTHCDHKKQKPPICNFISEQ 390
           +++ LL  +S     L+  F  YN+   +   CC P  +N T    K+ + P  +++ E 
Sbjct: 77  MILDLLPLEST--ALLKPSFAAYNSHIDRAILCCTPCTSNMTSWIAKQVQIPSDSYLQED 134

Query: 391 SGN 399
           S N
Sbjct: 135 SKN 137


>08_02_0282 - 15274413-15274465,15274564-15275245
          Length = 244

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 110 KGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYC 229
           +GE  N  + PE  Q+++ + +   ++P + + Y  CH+C
Sbjct: 170 QGESSNKNSEPEGEQKQEGIKASTSAVPLSTSPY--CHFC 207


>07_01_1145 - 10742757-10743085,10744784-10744865
          Length = 136

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 110 KGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYC 229
           +GE  N  + PE  Q+++ + +   ++P + + Y  CH+C
Sbjct: 94  QGESSNKNSEPEGEQKQEGIKASTSAVPLSTSPY--CHFC 131


>03_06_0396 - 33621471-33622031
          Length = 186

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 456 FFISFYS*SLLIHSICHCTIA--RLFTDKITNWRFLL 352
           FF+S     LLIH   HC  A  +L ++K+TN  F L
Sbjct: 7   FFLSLLLLLLLIHISIHCNAADSQLGSEKVTNLLFYL 43


>01_06_1067 + 34258036-34258051,34264808-34265679
          Length = 295

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 110 KGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYC 229
           +GE  N  + PE  Q+++ + +   ++P + + Y  CH+C
Sbjct: 232 QGESSNKNSEPEGEQKQEGIKASTSAVPLSTSPY--CHFC 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,930,936
Number of Sequences: 37544
Number of extensions: 362904
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)