Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0359
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32289| Best HMM Match : UPF0113 (HMM E-Value=5.7) 30 2.1
SB_24648| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0) 29 2.7
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21) 29 2.7
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15) 29 3.6
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 29 4.8
SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036) 29 4.8
SB_55068| Best HMM Match : PVL_ORF50 (HMM E-Value=7.8) 28 6.3
SB_49987| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_32617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1) 28 6.3
SB_19829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_40966| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 28 6.3
SB_15155| Best HMM Match : Ribosomal_L39 (HMM E-Value=9.4) 28 6.3
SB_12587| Best HMM Match : DUF901 (HMM E-Value=9.9) 28 6.3
SB_11945| Best HMM Match : EURL (HMM E-Value=9.7) 28 6.3
SB_10644| Best HMM Match : Ribosomal_L39 (HMM E-Value=9.4) 28 6.3
SB_8143| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_32289| Best HMM Match : UPF0113 (HMM E-Value=5.7)
Length = 247
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIRRL 433
+IT RI++ K+K + ++ +N+A+ +W W R L
Sbjct: 104 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTRNL 139
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 45 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 78
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 163 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 196
>SB_24648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 146
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIRRL 433
+IT RI++ K+K + ++ +N+A+ +W W R L
Sbjct: 45 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTRNL 80
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 104 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 137
>SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 939
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 524 SWFTFPLSTLFCGTISVFVGMAFSSYL 444
+W TF LSTL C T +VF +++ L
Sbjct: 124 AWTTFVLSTLACSTFTVFYSLSWGPEL 150
>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
Length = 683
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 489 WYYFCICRNGIFFISFYS*SLLIHSICHCTIARLF 385
W YF +CR IF I+ +L H +C+ T+++ +
Sbjct: 346 WRYFTVCRRYIFLITCLPSAL--HPLCYGTMSKFY 378
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 125 NNMNSPECIQQKQPVSSKLVSIPAT 199
+++ SP+C+QQ+QP +S ++P T
Sbjct: 1611 DSITSPDCLQQEQPSTSDRSTLPET 1635
>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
Length = 1215
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 250 TFLREKFHCYNAPKKKYCQCCLPKPNNCTHCDH 348
T LR + CY PK YC P+ H H
Sbjct: 346 TNLRSQQECYECPKGSYCLRASAAPSGICHTGH 378
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Frame = +1
Query: 190 PCNTDSILLMSLLCKDSIK*TFLRE----KFHCYNAPKKKYCQCCLPKPNNCTHCDHKKQ 357
PCN D + M+L KD LR+ + C+ AP K+ C C N
Sbjct: 753 PCNADYMWTMALSIKDGYYPACLRDGNYREIQCHYAPGKQ-CWCV---DENGNPISGTMA 808
Query: 358 KPPICNFISEQSGNCT 405
K P C E S T
Sbjct: 809 KSPNCTTSDEDSSGST 824
>SB_15595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 38 TDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPAT-QTQYC 214
+DN I + N P +GE +N N PE +Q Q S +IP T Q ++
Sbjct: 92 SDNSNILETLQGEHSDNSNIPEGLQGEHSDNSNIPETLQALQGEHSDNSNIPETLQGEHS 151
Query: 215 SCHYCVKTVSNEH 253
+ + EH
Sbjct: 152 DNSNIPEALQGEH 164
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 38 TDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCS 217
+DN I + N P A +GE +N N E +Q + +S + + Q ++
Sbjct: 22 SDNSNIPETLNGEHSDNSNIPEALQGEHSDNSNILETLQGEHSDNSNI--LETLQGEHSD 79
Query: 218 CHYCVKTVSNEHF*EKNFI 274
+KT++ EH N +
Sbjct: 80 NSNILKTLNGEHSDNSNIL 98
>SB_52343| Best HMM Match : OTU (HMM E-Value=0.0036)
Length = 1014
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 558 NEQLQLLQEKVDKFIYATEKTPQCSEPQEMLPNTGH*ISI 677
NEQ Q+++ K+DKF+ K + +E L G+ ISI
Sbjct: 289 NEQGQIIEWKLDKFMPFEHKLQALKQVKERLEKRGNEISI 328
>SB_55068| Best HMM Match : PVL_ORF50 (HMM E-Value=7.8)
Length = 300
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 45 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 78
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 163 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 196
>SB_49987| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 45 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 78
>SB_32617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 46 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 79
>SB_24017| Best HMM Match : DUF646 (HMM E-Value=4.1)
Length = 486
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 379 ISEQSGNCTVADAVDQKTLAIKRYEENAIPTNTEIVPQNNVLKGNVNQLLQIYSKL 546
+ ++ NC A +K L KR+ EN P + V+ ++N L KL
Sbjct: 425 VEQKKQNCKTTQAKTEKALTFKRHSENK-PIKQSTHSFDLVISNSINGLFVFIKKL 479
>SB_19829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 46 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 79
>SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 105 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 138
>SB_40966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 46 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 79
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 107 KKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCVKT-VSNE 250
KK + IN + PE Q+K VSS V+ TQT KT V NE
Sbjct: 1707 KKSKDINTLVHPEMKQEKMSVSSARVTKSITQTNNSVKETVPKTIVENE 1755
>SB_15155| Best HMM Match : Ribosomal_L39 (HMM E-Value=9.4)
Length = 168
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 46 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 79
>SB_12587| Best HMM Match : DUF901 (HMM E-Value=9.9)
Length = 253
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 190 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 223
>SB_11945| Best HMM Match : EURL (HMM E-Value=9.7)
Length = 323
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 537 FKIIKHQNEQLQLLQEKVDKFIYATEKTPQCSEPQEMLPNTG 662
F++I L+ Q ++DK +Y + P S ++ NTG
Sbjct: 125 FRVIGTFRRMLRTAQRRLDKSLYEMQNAPVSSTSHDVKDNTG 166
>SB_10644| Best HMM Match : Ribosomal_L39 (HMM E-Value=9.4)
Length = 109
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 46 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 79
>SB_8143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 237
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 323 QITARIVITKSKNLQFVILSVNNLAIVQWQMLWIR 427
+IT RI++ K+K + ++ +N+A+ +W W R
Sbjct: 46 KITKRILVQKNK-AEMKLIQKSNVAVAEWLRRWTR 79
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,707,396
Number of Sequences: 59808
Number of extensions: 464448
Number of successful extensions: 1129
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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