Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0359
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021963-1|AAX94784.2|  840|Drosophila melanogaster LD05244p pro...    29   6.0  
AE014296-808|AAF47871.2|  840|Drosophila melanogaster CG15011-PA...    29   6.0  
X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protei...    29   8.0  
M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein ( D.me...    29   8.0  
AY128478-1|AAM75071.1|  950|Drosophila melanogaster RE42104p pro...    29   8.0  
AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA...    29   8.0  

>BT021963-1|AAX94784.2|  840|Drosophila melanogaster LD05244p
           protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +1

Query: 307 CCLPKPNNCTHCDHKKQKPP---ICNFISEQSGNCTVADAVDQKTLAIKRYEENAIPTNT 477
           C +P+P  C H   K   PP    CNF+ +   +C +   V +     + Y+E    +  
Sbjct: 626 CTVPRPTGCIHACPKGCHPPPCAPCNFVIKTKCHCGLNQLVYK---CNEYYDETG--SVQ 680

Query: 478 EIVPQNNVLKGNVNQLLQIY 537
           EI+ +   L+   N+ L+ Y
Sbjct: 681 EIIERREKLRSCGNRCLKNY 700


>AE014296-808|AAF47871.2|  840|Drosophila melanogaster CG15011-PA
           protein.
          Length = 840

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
 Frame = +1

Query: 307 CCLPKPNNCTHCDHKKQKPP---ICNFISEQSGNCTVADAVDQKTLAIKRYEENAIPTNT 477
           C +P+P  C H   K   PP    CNF+ +   +C +   V +     + Y+E    +  
Sbjct: 626 CTVPRPTGCIHACPKGCHPPPCAPCNFVIKTKCHCGLNQLVYK---CNEYYDETG--SVQ 680

Query: 478 EIVPQNNVLKGNVNQLLQIY 537
           EI+ +   L+   N+ L+ Y
Sbjct: 681 EIIERREKLRSCGNRCLKNY 700


>X56811-1|CAA40148.1| 1408|Drosophila melanogaster Serrate protein
           protein.
          Length = 1408

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 271 HCYNAPKKKYCQCCLPKPNNCTHCDHKKQKPPICN 375
           HC N P+  YC C  P      HC+   Q  P+C+
Sbjct: 699 HCLNTPEGYYCHC--PPDRAGKHCE---QLRPLCS 728


>M35759-1|AAA28938.1| 1404|Drosophila melanogaster protein (
           D.melanogaster serrate(Ser) mRNA, complete cds. ).
          Length = 1404

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 271 HCYNAPKKKYCQCCLPKPNNCTHCDHKKQKPPICN 375
           HC N P+  YC C  P      HC+   Q  P+C+
Sbjct: 695 HCLNTPEGYYCHC--PPDRAGKHCE---QLRPLCS 724


>AY128478-1|AAM75071.1|  950|Drosophila melanogaster RE42104p
           protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 271 HCYNAPKKKYCQCCLPKPNNCTHCDHKKQKPPICN 375
           HC N P+  YC C  P      HC+   Q  P+C+
Sbjct: 472 HCLNTPEGYYCHC--PPDRAGKHCE---QLRPLCS 501


>AE014297-4084|AAF56678.2| 1407|Drosophila melanogaster CG6127-PA
           protein.
          Length = 1407

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 271 HCYNAPKKKYCQCCLPKPNNCTHCDHKKQKPPICN 375
           HC N P+  YC C  P      HC+   Q  P+C+
Sbjct: 698 HCLNTPEGYYCHC--PPDRAGKHCE---QLRPLCS 727


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,402,160
Number of Sequences: 53049
Number of extensions: 690634
Number of successful extensions: 1960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1960
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)