Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0359
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27980.1 68415.m03391 expressed protein                             29   2.9  
At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase, p...    29   2.9  
At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase fa...    29   3.9  
At2g29950.1 68415.m03643 expressed protein ; expression supporte...    29   3.9  
At1g56100.1 68414.m06442 pectinesterase inhibitor domain-contain...    28   5.1  
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim...    28   6.8  
At5g16320.1 68418.m01908 expressed protein                             27   9.0  
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    27   9.0  
At4g06728.1 68417.m01098 hypothetical protein                          27   9.0  
At4g06724.1 68417.m01096 hypothetical protein                          27   9.0  
At1g66950.1 68414.m07612 ABC transporter family protein similar ...    27   9.0  

>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 23/76 (30%), Positives = 34/76 (44%)
 Frame = +2

Query: 53  IYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPATQTQYCSCHYCV 232
           IY   G +SL + +  L+    F  + N   C   +  V + L S+P+ +    SC YCV
Sbjct: 648 IYTTNG-VSLHELSVALSMDQRFSIHENDDLCSICRDGVCASLPSLPSERW---SCKYCV 703

Query: 233 KTVSNEHF*EKNFIVI 280
             V  E F + N   I
Sbjct: 704 NMVEREKFVDSNLNAI 719


>At1g52820.1 68414.m05970 2-oxoglutarate-dependent dioxygenase,
           putative similar to AOP1 [Arabidopsis
           lyrata][GI:16118889]; contains Pfam profile PF03171:
           2OG-Fe(II) oxygenase superfamily domain
          Length = 317

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 284 HQKRNIVSVAYQNQITARIVITKSKN 361
           H  +NIV++ YQN +    V TK KN
Sbjct: 190 HTDKNIVTILYQNHVEGLEVQTKDKN 215


>At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase
           family protein low similarity to enolase-phosphatase E-1
           enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 418

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 2/137 (1%)
 Frame = +2

Query: 20  NRDLNCTDNGQIYKQFGRLSLGKENYPLAKKGEFINNMNSPECIQQKQPVSSKLVSIPAT 199
           N+   CTD   ++ +  RLSLGK    L K G     M +   +     + S LV++   
Sbjct: 101 NKPPKCTDCAPLFMKNRRLSLGKR---LRKLGYKAYEMRNAGAVIHSHGMESCLVTMLNP 157

Query: 200 QT-QYCSCHY-CVKTVSNEHF*EKNFIVIMHQKRNIVSVAYQNQITARIVITKSKNLQFV 373
           Q  ++   H   +K +    + ++  + I      I + AY+N++T  +        +  
Sbjct: 158 QAKEFRITHMEMIKGIQGHGYYDELVVPI------IENTAYENELTDSLTKAIEAYPKAT 211

Query: 374 ILSVNNLAIVQWQMLWI 424
            + V N  +  W   WI
Sbjct: 212 AVLVRNHGVYIWGDSWI 228


>At2g29950.1 68415.m03643 expressed protein ; expression supported
           by MPSS
          Length = 125

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 418 VDQKTLAIKRYEENAIPTNTEIVPQN----NVLKGNVNQLLQIYSKL 546
           +DQ    I+R  EN +    + V +N    N + GN++Q+++IYS L
Sbjct: 52  LDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVMEIYSDL 98


>At1g56100.1 68414.m06442 pectinesterase inhibitor domain-containing
           protein contains TIGRFAM TIGR01614: pectinesterase
           inhibitor domain; contains weak hit to Pfam PF04043:
           Plant invertase/pectin methylesterase inhibitor
          Length = 232

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
 Frame = +1

Query: 205 SILLMSLLCKDSIK*TFLREKFHCYNAPKKKYCQCCLPKPNNCTHCDHKKQKPPI--C-- 372
           ++L++S +C +      ++E+  C+NA     C  CL       H D       I  C  
Sbjct: 11  ALLVISPICAEK---DLMKEE--CHNAQVPTICMQCLESDPTSVHADRVGIAEIIIHCLD 65

Query: 373 ---NFISEQSGNCTVADAVDQKTLAIKRYEENAI 465
              + I++Q G   + + V++KT   K   +N I
Sbjct: 66  SRLDIITKQKGELQIGEVVEKKTRKRKSKSDNKI 99


>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
           similar to similar to PIR|T05180|T05180 S-receptor
           kinase ARK3 precursor - [Arabidopsis thaliana]
          Length = 843

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 71  YQIAYKFGHCQCNSNPYYYCV 9
           Y++   FG+C  NS P  YC+
Sbjct: 293 YKVCGNFGYCDSNSLPNCYCI 313


>At5g16320.1 68418.m01908 expressed protein
          Length = 470

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 534 LFKIIKHQNEQLQLLQEKVDKFIYATEK 617
           L KIIK QN + +  QEKV++ +   EK
Sbjct: 331 LIKIIKDQNLESEFTQEKVEERVEELEK 358


>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = -3

Query: 674 GYLMSSIW*H--LLGFRTLWSFFCGIYEFIY--FLLQQLK----LFILMFYNFE*ICNSW 519
           G  + +IW +  LLGF  ++  F G+Y+  +  F +   K    L  L   +   +C  W
Sbjct: 214 GVALGAIWTNVNLLGFLIIYIVFSGVYQKTWGGFSMDCFKGWRSLMKLAIPSCVSVCLEW 273

Query: 518 FTFPLSTLFCGTI 480
           + + +  L CG +
Sbjct: 274 WWYEIMILLCGLL 286


>At4g06728.1 68417.m01098 hypothetical protein
          Length = 115

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271 HCYNAPKKKYCQC-CLPKPNNCTHCDHKKQKPPICNFISE 387
           H    P+K+  Q   + KP    H +H   + PIC+F ++
Sbjct: 22  HSIATPEKQAAQFHSIEKPEESPHRNHSITRKPICSFCTQ 61


>At4g06724.1 68417.m01096 hypothetical protein
          Length = 112

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271 HCYNAPKKKYCQC-CLPKPNNCTHCDHKKQKPPICNFISE 387
           H    P+K+  Q   + KP    H +H   + PIC+F ++
Sbjct: 22  HSIATPEKQAAQFHSIAKPEESPHRNHSITRKPICSFCTQ 61


>At1g66950.1 68414.m07612 ABC transporter family protein similar to
            PDR5-like ABC transporter GI:1514643 from [Spirodela
            polyrhiza]
          Length = 1454

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 626  LWSFFCGIYEFIYFLLQQLKLFILM-FYNFE*ICNSWFTFPLSTLFCG 486
            LW ++  +  FIYF L  + L  L   Y    IC S+F   L  LF G
Sbjct: 1313 LWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFF-LSLWNLFSG 1359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,306,647
Number of Sequences: 28952
Number of extensions: 324552
Number of successful extensions: 821
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)