Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0356
         (810 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.6  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   6.6  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    21   8.8  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 569 CQHQHHYQSQFHNHPGHYRQ 510
           C +  +Y+S+  N P  Y+Q
Sbjct: 66  CNNTANYKSEAQNQPSSYKQ 85


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -2

Query: 575 FFCQHQHHYQSQFHNHPG 522
           F  +++HH +    NH G
Sbjct: 238 FITEYKHHLEYHLRNHAG 255



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 620 YQVLYQLMIPRQVQSHFVFSPFSCQAPTYXFTLCH 724
           Y  + + M+   ++SH     +SC+  +Y    CH
Sbjct: 266 YTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCH 300


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 471 PRVVSQTSRPQIQSPYPN 418
           P  +  TSRP++Q P P+
Sbjct: 87  PFNIDCTSRPKLQEPQPS 104


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 620 YQVLYQLMIPRQVQSHFVFSPFSCQAPTYXFTLCH 724
           Y  + + M+   ++SH     +SC+  +Y    CH
Sbjct: 24  YTCVNKSMLNSHMKSHSNVYRYSCRDCSYATKYCH 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,581
Number of Sequences: 336
Number of extensions: 3388
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22102797
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)