Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0356
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    28   1.8  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.4  
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa...    26   7.3  
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo...    25   9.6  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.6  

>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +1

Query: 223 LASDNKAENRRLWRGTLAVRSL 288
           LA+DN+ +  + WRG +++R+L
Sbjct: 38  LATDNRTQTYQSWRGMISIRAL 59


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 608 PVITYQVLYQLMIPRQVQSHFVFSPFSCQAPTYXFTLCH 724
           P++ + + YQ  IP      F   PF+C  P Y  T  H
Sbjct: 616 PILNFGIQYQPFIPFTAVPSF---PFNCNVPNYPQTSDH 651


>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 648 LDKSKVTLFSRPSLAKHQLTXSPYVIFRSFE 740
           +D   V  F  P+ AKH+ +  P V FR++E
Sbjct: 580 MDTDDVASFESPN-AKHEESGMPVVTFRNYE 609


>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 389 GRSSRFADRRWQHATTSCRSTPAFVFDLIHVV 294
           GRS +  ++    AT  C S PAFV  +I  +
Sbjct: 170 GRSMKLPEKLIDAATAVCGSGPAFVATMIEAM 201


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 583  TIFAATSRSSDYISSTLPTNDTSTSPKS 666
            ++ ++ S +S YI+S+  +N  ST PK+
Sbjct: 931  SLTSSVSTASSYIASSASSNTLSTEPKT 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,021
Number of Sequences: 5004
Number of extensions: 54402
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)