Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0356
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)                      27   4.3  
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)                 29   4.5  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   29   4.5  
SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                29   4.5  
SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)                29   5.9  
SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)                        28   7.8  

>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 566 QHQHHYQSQFHNHPGHYRQSACH 498
           QH HH+    HNH  H++Q   H
Sbjct: 271 QHHHHHHHHHHNHHHHHQQHHHH 293


>SB_24336| Best HMM Match : PqiA (HMM E-Value=1.5)
          Length = 260

 Score = 26.6 bits (56), Expect(2) = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 560 QHHYQSQFHNHPGHYRQ 510
           QHH+Q Q H H  H+ Q
Sbjct: 88  QHHHQRQRHRHHQHHHQ 104



 Score = 21.0 bits (42), Expect(2) = 4.3
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 563 HQHHYQSQF 537
           HQHH+Q Q+
Sbjct: 69  HQHHHQLQY 77


>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
          Length = 206

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 524 GHYRQSACHLPLGYRFNLLVSYHRLLVL 441
           GHYR + CHL +G   N L    ++L L
Sbjct: 104 GHYRAAKCHLAMGSASNALREIRKVLEL 131


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 593 QQLHGPVITYQVLYQLMIPRQVQSHFVFSPFSCQAPTYXFTLCH---LQII*ISIRFKTG 763
           Q L GP++ Y+VL Q +    V  +  FSP S        T  H    +I  ISIR K G
Sbjct: 524 QSLQGPLLEYRVLVQSLNGTAV--NHTFSPNSTSEDLDSLTKFHEYRFEIFGISIRGKHG 581

Query: 764 -SHILHL 781
            S ++H+
Sbjct: 582 PSAVIHV 588


>SB_9272| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 97  MSDAELRTKLAEHGFPVMPITASTR 171
           ++DAELR KL + G  V P+T +TR
Sbjct: 6   LTDAELRQKLKDLGENVAPVTPTTR 30


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 566 QHQHHYQSQFHNHPGHYRQSACH 498
           QH HH     HNH  H++Q   H
Sbjct: 52  QHNHHQHHHHHNHHHHHQQHHHH 74


>SB_3013| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2)
          Length = 213

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -3

Query: 580 RCFF---VNINITIRASFIIILVITDKVRVTCRLVIVSTSSCRIT 455
           R FF   +NI ITI  +  I + IT  + +T  ++I+ T +  IT
Sbjct: 112 RVFFAVIINIVITITITITITITITITITITITIIIIITITITIT 156


>SB_8451| Best HMM Match : GRP (HMM E-Value=9.6)
          Length = 158

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 563 HQHHYQSQFHNHPGHYRQSACHLPLG 486
           H HH+    H H G ++  A H+ LG
Sbjct: 112 HHHHHHHHHHQHRGCHKAVAGHVRLG 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,945,402
Number of Sequences: 59808
Number of extensions: 433164
Number of successful extensions: 1446
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)