Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0356
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    33   0.24 
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    33   0.24 
AF003739-3|AAB58065.1|  166|Caenorhabditis elegans Human emerin ...    33   0.24 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    32   0.56 
AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS fact...    29   5.2  
Z75527-2|CAA99775.2|  636|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical...    28   9.1  
AF370361-1|AAK52514.1|  636|Caenorhabditis elegans putative tran...    28   9.1  

>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 88  VESMSDAELRTKLAEHGFPVMPITASTR 171
           VE MSDAELR +L   G  V P+T +TR
Sbjct: 4   VEKMSDAELRAELNVRGANVGPVTGTTR 31


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 88  VESMSDAELRTKLAEHGFPVMPITASTR 171
           VE MSDAELR +L   G  V P+T +TR
Sbjct: 4   VEKMSDAELRAELNVRGANVGPVTGTTR 31


>AF003739-3|AAB58065.1|  166|Caenorhabditis elegans Human emerin
           homolog protein 1 protein.
          Length = 166

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 88  VESMSDAELRTKLAEHGFPVMPITASTR 171
           V  ++DAELR  L  HG  V PI A+TR
Sbjct: 3   VSQLTDAELRDSLKSHGVSVGPIVATTR 30


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -3

Query: 358 GNMLPPVVARRPRLSLILFTLSKSDSSPLEYRAKD 254
           GNML P+VA  P L L  F  S +    LE RAK+
Sbjct: 91  GNMLFPLVAEIPNLKLFAFDFSDNAVKLLEERAKE 125


>AB096001-1|BAE53417.1|  676|Caenorhabditis elegans bHLH-PAS factor
           protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 575 FFCQHQHHYQSQFHNHPGH 519
           F  QHQHH Q Q  + P H
Sbjct: 603 FAMQHQHHLQQQHQSQPNH 621


>Z75527-2|CAA99775.2|  636|Caenorhabditis elegans Hypothetical
           protein C15C8.2 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 575 FFCQHQHHYQSQFHNHPGH 519
           F  QHQHH Q Q  + P H
Sbjct: 603 FAMQHQHHLQQQHQSQPPH 621


>AL132948-45|CAD31822.2|  542|Caenorhabditis elegans Hypothetical
           protein Y39B6A.25 protein.
          Length = 542

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 192 QFLHQKFPRGSRNRHNW 142
           QFLHQK PRG+     W
Sbjct: 450 QFLHQKLPRGAHVHFRW 466


>AF370361-1|AAK52514.1|  636|Caenorhabditis elegans putative
           transcription factor C15C8.2protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 575 FFCQHQHHYQSQFHNHPGH 519
           F  QHQHH Q Q  + P H
Sbjct: 603 FAMQHQHHLQQQHQSQPPH 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,770
Number of Sequences: 27780
Number of extensions: 317771
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)