Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0356
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   3.7  
At5g02900.1 68418.m00233 cytochrome P450, putative cytochrome P4...    28   6.4  
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   8.4  

>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 563 HQHHYQSQFHNHPGHYRQ 510
           H HH Q Q HNH  H+ Q
Sbjct: 150 HPHHQQQQQHNHHHHHHQ 167


>At5g02900.1 68418.m00233 cytochrome P450, putative cytochrome P450
           homolog, Arabidopsis thaliana, PIR:T09367
          Length = 480

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -2

Query: 497 LPLGYRFNLLVSYHRLLVLRFRALIRITPGW*AFLGGRSSRFADRRWQHATTSCRSTPAF 318
           LP G++ +   S  ++L+  + AL R+   W    G  +S F   RW   TTS R  P+F
Sbjct: 363 LPSGHKVD---SSMKILIFIY-ALGRMRAVW----GEDASEFKPERWLSETTSLRHEPSF 414

Query: 317 VF 312
            F
Sbjct: 415 KF 416


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 577 IYTIFAATSRSSDYISSTLPTNDTSTSPKSLC 672
           ++T+   +S  S +IS+ +P    +TSP ++C
Sbjct: 8   LFTLACLSSLPSPFISAQIPAIGNATSPSNIC 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,765
Number of Sequences: 28952
Number of extensions: 293026
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)