Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0354
(469 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0769 + 31616644-31616875,31616980-31617203,31617308-316174... 71 6e-13
06_01_0841 - 6379999-6380040,6380641-6380760,6380863-6380964,638... 53 1e-07
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 43 1e-04
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 42 2e-04
12_01_0228 - 1726856-1727049,1727280-1727355,1727454-1727585,172... 38 0.005
11_01_0231 - 1791754-1791947,1792178-1792253,1792352-1792483,179... 37 0.009
11_01_0309 + 2312786-2313211,2313311-2313527,2313613-2313731,231... 31 0.35
06_01_0172 + 1362101-1363708 29 2.5
04_04_0207 + 23602065-23604315,23604611-23605116 29 2.5
04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680 29 2.5
01_01_0965 - 7589659-7589785,7590188-7590317,7590339-7590438,759... 27 5.7
09_02_0258 - 6380702-6380758,6380767-6380794,6381352-6381467,638... 27 7.5
06_03_1199 - 28339942-28340703 27 7.5
05_07_0027 + 27140626-27141457,27143101-27143901,27144838-271448... 27 10.0
05_07_0026 - 27136386-27137264 27 10.0
04_04_0440 - 25219961-25221529 27 10.0
>02_05_0769 +
31616644-31616875,31616980-31617203,31617308-31617426,
31617528-31617684,31617928-31618029,31618111-31618230,
31618761-31618855,31619900-31619984,31620090-31620180,
31620534-31620618,31620702-31620806,31621019-31621894,
31622016-31622124,31622266-31622414,31622518-31622737
Length = 922
Score = 70.5 bits (165), Expect = 6e-13
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = +1
Query: 304 KEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 462
+E + IPV W+LNER YG L GLNK ETA ++G+ QV WRRS+D+PPP
Sbjct: 173 EETKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPP 225
Score = 54.0 bits (124), Expect = 6e-08
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = +2
Query: 86 KMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKAL 226
K ++ +++IRHGES WN+KNLF G D L+ KG EA+ AGK +
Sbjct: 75 KKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKRI 121
>06_01_0841 -
6379999-6380040,6380641-6380760,6380863-6380964,
6381146-6381302,6381480-6381511
Length = 150
Score = 53.2 bits (122), Expect = 1e-07
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +1
Query: 355 ERHYGGLTGLNKAETAAKYGEAQVQIWRRSFDVPPP 462
E YG L GLNK ETA ++G QV WRRS+D+PPP
Sbjct: 9 EVRYGELQGLNKQETADRFGNEQVHKWRRSYDIPPP 44
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 42.7 bits (96), Expect = 1e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 104 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAE 235
++V++RHGE+ WN + G D +L++ G+Q+AV + L E
Sbjct: 10 ELVVVRHGETSWNASRIVQGQMDPELNEIGKQQAVVVARRLARE 53
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 41.9 bits (94), Expect = 2e-04
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 104 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKAL 226
++V++RHGE+ WN + G D +L++ G+Q+AV + L
Sbjct: 575 ELVVVRHGETSWNSSRIVQGQMDPELNEIGKQQAVVVARRL 615
>12_01_0228 -
1726856-1727049,1727280-1727355,1727454-1727585,
1727665-1727775,1727892-1727942,1728114-1728275,
1729558-1729584
Length = 250
Score = 37.5 bits (83), Expect = 0.005
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 104 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAE 235
++V++RHGE+ N + G D +L++ GRQ+AV + L E
Sbjct: 45 EVVVVRHGETSANALCIIQGQMDIELNEAGRQQAVMVARRLAKE 88
>11_01_0231 -
1791754-1791947,1792178-1792253,1792352-1792483,
1792563-1792673,1792790-1792840,1793012-1793122
Length = 224
Score = 36.7 bits (81), Expect = 0.009
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 104 KIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAE 235
++V++RHGE+ N + G D +L++ GRQ+AV + L E
Sbjct: 19 EVVVVRHGETSANALCIIQGQTDIELNEAGRQQAVMVARRLAKE 62
>11_01_0309 +
2312786-2313211,2313311-2313527,2313613-2313731,
2313921-2314019,2314498-2314551,2314635-2314733,
2314838-2314945,2315418-2315694,2316051-2316160,
2316425-2316493,2316608-2316714,2316754-2316792,
2317126-2317171,2317593-2317619
Length = 598
Score = 31.5 bits (68), Expect = 0.35
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 104 KIVMIRHGESEWNQKNLFCGWFDAD-LSDKGRQEAVAAGKALKAEGY 241
++V++RHG+S WN + G D L+ KG +A + L ++ +
Sbjct: 55 RVVLVRHGQSTWNAEGRIQGSSDISVLTPKGESQAETSRLMLLSDSF 101
>06_01_0172 + 1362101-1363708
Length = 535
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 441 AAPDLNLSLPVFGSCLSLVQSSEATIMPLVQS 346
AAP L SLPVF + LS + +++ ++P V S
Sbjct: 83 AAPPLPPSLPVFAAVLSRLPAADPALLPPVLS 114
>04_04_0207 + 23602065-23604315,23604611-23605116
Length = 918
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = +2
Query: 131 SEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIVTRLF*NVPRL 286
S W++ +C W + G VA G +L+ G DI VP L
Sbjct: 59 STWSRSTPYCNWSHVTCTAGGGGGGVAVGLSLQGLGLSGDIAAEPLCRVPGL 110
>04_04_0175 - 23307507-23308688,23308962-23309647,23310662-23310680
Length = 628
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 286 TLNSILKEIGQPDIPVEKTWRLNERHYGGLTGLNKAETAAKYGE 417
+L +I+ ++ PVEKT ++ YG L G N ET E
Sbjct: 310 SLPTIVDDVYSVPCPVEKTDSFSDIVYGALRGFNFLETGESIAE 353
>01_01_0965 -
7589659-7589785,7590188-7590317,7590339-7590438,
7590524-7590643,7590910-7591145,7591585-7591714
Length = 280
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LSNKM-PAKYKIVMIRHGESEWNQKNLFCGWFDAD-LSDKGRQEAVAAGKALKAEGYQFD 250
L+N+M KI ++RHG S WN ++ G + L++ G ++A AL +FD
Sbjct: 94 LTNEMLTLSKKITLVRHGLSTWNAESRVQGSSNLSVLTETGAKQAEKCRDAL--ANMKFD 151
Query: 251 I 253
+
Sbjct: 152 V 152
>09_02_0258 -
6380702-6380758,6380767-6380794,6381352-6381467,
6382318-6382435,6382542-6382721,6383214-6383313,
6384315-6384618
Length = 300
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 92 PAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAEGYQFDIV 256
P + +++++RHGES + D LS GR A++ L+ G+ ++V
Sbjct: 80 PPRRRLILLRHGESAAGGR--LTRDHDRPLSKAGRAAAISVSNKLQQMGWIPELV 132
>06_03_1199 - 28339942-28340703
Length = 253
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -2
Query: 462 RWRNVEAAAPDLNLSLPVFGSCLSLVQSSEATIMPL 355
RW+++ P++ + V G+ SL +SSE + +
Sbjct: 61 RWQHLHTRLPNVRFRMSVLGNLASLGESSEPRVQSM 96
>05_07_0027 +
27140626-27141457,27143101-27143901,27144838-27144873,
27145133-27145420,27145836-27146289,27146520-27146964
Length = 951
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 325 IPVEKTWRLNERHYGGL 375
+PV K W +NE++YG L
Sbjct: 204 VPVLKDWLMNEKYYGKL 220
>05_07_0026 - 27136386-27137264
Length = 292
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 325 IPVEKTWRLNERHYGGL 375
+PV K W +NE++YG L
Sbjct: 211 VPVLKDWLMNEKYYGKL 227
>04_04_0440 - 25219961-25221529
Length = 522
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 276 CPDYTELYLKGDRSARYTC*ENLEIER 356
CP ++ LK R Y C ENL++ R
Sbjct: 418 CPSLVKVKLKRCRGVSYECIENLKVVR 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,781,584
Number of Sequences: 37544
Number of extensions: 236746
Number of successful extensions: 648
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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