Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0354
         (469 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    27   6.7  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    27   6.7  
Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U41558-2|AAK39245.2|  457|Caenorhabditis elegans Hypothetical
           protein K02B2.1 protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 59  SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKGRQEAVAAGKALKAE 235
           SR   +L N       I + RHG+SE+N      G  D+ L++ G++ A A     + E
Sbjct: 232 SRVVYFLMNIHLLPRSIYLTRHGQSEYNAMGRLGG--DSPLTEDGQKYASALADFFEEE 288


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 59  SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKG 193
           SR   +L N       I + RHGESE+N+     G  D+ LS+ G
Sbjct: 233 SRVVYFLMNIHLLPRSIYLSRHGESEYNRIGRLGG--DSPLSENG 275


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 59  SRYEIYLSNKMPAKYKIVMIRHGESEWNQKNLFCGWFDADLSDKG 193
           SR   +L N       I + RHGESE+N+     G  D+ LS+ G
Sbjct: 239 SRVVYFLMNIHLLPRSIYLSRHGESEYNRIGRLGG--DSPLSENG 281


>Z73098-5|CAA97332.1|  103|Caenorhabditis elegans Hypothetical
           protein T21C9.4 protein.
          Length = 103

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 23  YRGFSSVLSVICSRYEIYLSNKMPAKYKI 109
           Y   +  L  IC  YE YL  K+PA+ +I
Sbjct: 22  YENTTECLEGICRVYEEYLKKKVPAQNEI 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,221
Number of Sequences: 27780
Number of extensions: 195901
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)