Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0353
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 63 4e-11
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2... 30 0.30
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 30 0.30
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.70
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 28 0.93
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 1.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.0
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 5.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.7
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.7
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/61 (50%), Positives = 37/61 (60%)
Frame = +1
Query: 46 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 225
F RYVE GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 226 K 228
K
Sbjct: 64 K 64
Score = 48.8 bits (111), Expect = 6e-07
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 255 VRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNRARTAVFKSLK 431
V K W + KW S WA+KL K+ R+Q+ D+DRF + + +R + AV K+LK
Sbjct: 74 VAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAKALK 133
>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
2|||Manual
Length = 228
Score = 29.9 bits (64), Expect = 0.30
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 234 VHSPYSSVRKAWTDAKLNEKWTESQWA 314
VH PY+S+ +A+ D +N+K E W+
Sbjct: 135 VHHPYTSLEQAFHDGIINQKQLEFAWS 161
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.9 bits (64), Expect = 0.30
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 52 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 138
+ ++PG+VAL+ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 52 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 138
+ ++PG+VALV G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.3 bits (60), Expect = 0.93
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 359 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 261
V+C CAL +R P+ FCP ++F+ P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 497 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 351
HF F+ + G + S H LE+GS LN S I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 261 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 440
+A + + E+ E++ +KLA +EKR + + K R+++ RA+ A K + ++
Sbjct: 708 RAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQMSRES 765
Query: 441 ARA 449
A A
Sbjct: 766 AHA 768
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 64 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 189
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 195 KPTPSHKIPPQIRVHSPYSSVRKAWTDAKLN 287
KP P+ ++ PQ ++SP S + KL+
Sbjct: 377 KPKPAKELSPQATLNSPIQSAEAGNVELKLH 407
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 149 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 250
++ D AV Y N+ NS++ ++A N S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,746
Number of Sequences: 5004
Number of extensions: 47120
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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