Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0353
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    60   1e-09
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    58   5e-09
03_05_0161 + 21400580-21401695                                         30   1.6  
05_03_0050 + 7809267-7809481,7809545-7809767,7810230-7810297,781...    29   3.8  
05_05_0165 + 22851863-22852566,22852811-22852964,22853112-228532...    28   6.7  
04_04_0387 + 24869594-24871480                                         27   8.8  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 33/62 (53%), Positives = 41/62 (66%)
 Frame = +1

Query: 40  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 219
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58

Query: 220 RL 225
           ++
Sbjct: 59  KI 60



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +3

Query: 261 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKA 440
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR  A       LK  A
Sbjct: 73  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRGGAIRQELAKLKKTA 132

Query: 441 A 443
           A
Sbjct: 133 A 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 32/61 (52%), Positives = 40/61 (65%)
 Frame = +1

Query: 43  PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 222
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 223 L 225
           +
Sbjct: 73  I 73



 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 18/44 (40%), Positives = 29/44 (65%)
 Frame = +3

Query: 261 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 392
           KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 86  KAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 203 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 108
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>05_03_0050 +
           7809267-7809481,7809545-7809767,7810230-7810297,
           7811979-7812131,7812188-7812380
          Length = 283

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 273 LSTLSSQTSRGCERVFEAEFCEMELV*ADLLPRYSTAGSINQCTSL 136
           L  LS Q S G +R    EF E +LV  D++PR   A  +  C S+
Sbjct: 188 LEDLSLQVSHG-KRSKVWEFFEQDLVVTDVVPRRLRAHIVESCPSI 232


>05_05_0165 +
           22851863-22852566,22852811-22852964,22853112-22853261,
           22853769-22853930,22854070-22854242,22854330-22854396,
           22854556-22854722,22855216-22855374,22856187-22856276,
           22856392-22856483,22856587-22856681,22857328-22857405,
           22858364-22858459,22859132-22859206,22859290-22859381,
           22859462-22859624,22859734-22859794,22860016-22860116,
           22860567-22860614
          Length = 908

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = -3

Query: 305 TFCPFFIEFSIC-PRFPHRRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSI 129
           T  P  +   +C PR P  R        RR  V       +  L +P P PS+++R  S+
Sbjct: 5   TLPPPHLRLDLCSPRLPPLRSPGCRRRRRRGRV-------LSALSSPSPSPSSASRSQSV 57

Query: 128 TSTTLTNFPFKGPSATR 78
           ++  L      GP+ +R
Sbjct: 58  STAPLERGVGPGPATSR 74


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 285 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 464
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 465 K 467
           K
Sbjct: 557 K 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,695,976
Number of Sequences: 37544
Number of extensions: 326874
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)