Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0353
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42) 29 2.9
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32) 28 5.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 5.1
SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 28 6.8
SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41) 28 6.8
SB_54432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 27 9.0
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_20540| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-11) 27 9.0
>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/62 (45%), Positives = 43/62 (69%)
Frame = +3
Query: 255 VRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKV 434
V+KA+ A++ +KW ++ WA+KLA ++KRA + D+DRFKL A+ K+NR K LK
Sbjct: 281 VKKAFEAAQVQDKWEQTAWARKLAMRKKRATLNDFDRFKLKLAKQKKNRLLRTEVKKLKK 340
Query: 435 KA 440
+A
Sbjct: 341 EA 342
>SB_56370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 299 CPFFIEFSICPRFPHRRVGAVNAYLRRNFVRWSWFKRI 186
C FF+ +CPR P R G ++ R+F ++K I
Sbjct: 507 CSFFLARYLCPRSPRRGWGELSLTTMRHFRCQRYYKNI 544
>SB_50597| Best HMM Match : 7tm_1 (HMM E-Value=2.59941e-42)
Length = 347
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 233 AYLRRNFVRWSWFKRICCLGTPLPGPSTSARVWSITSTTLTNF 105
AY+ R++ WS+ K C + P+ S S + +IT TL +
Sbjct: 87 AYIIRDYFSWSFGKIACQIIIPMNDVSFSVSICTITVITLERY 129
>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
Length = 337
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 76 ALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIR-LNQLHLTKF 219
+L+ D L + VS VDV + A+VD P + RQ ++ ++ H F
Sbjct: 70 SLIGDYDLFAREVSTVDVRIASHAIVDRPRASWKRQSLKGISNFHFLAF 118
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 203 SISQNSASNTRSQPLLVCEESVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVN 376
S+ ++S S+ EE D + K+D K +V++ RE ND+L + VN
Sbjct: 1680 SVLESSGGTMNSEESFFLEE--DNAILKRKLDEKETALKVTQDREREMNDKLMALYVN 1735
>SB_9321| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 254 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 156
+RV +AY N + W W++R+ G + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154
>SB_38407| Best HMM Match : DDE (HMM E-Value=5.40004e-41)
Length = 700
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 254 RRVGAVNAYLRRNFVRWSWFKRICCLGTPLPGP 156
+RV +AY N + W W++R+ G + GP
Sbjct: 122 KRVCTRSAYSDINRLAWQWYERMRAQGNQISGP 154
>SB_54432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 228 IRVHSPYSSVRKAWTDAKLNEKWTESQ--WAQKLANKEKRAQMTDYD 362
+ +H+ Y + + KLN++ ++S WA KLA+ EK+ + D
Sbjct: 34 LELHNKYRKIHDS-PPMKLNDEMSKSAQAWADKLASMEKQQHSNEKD 79
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 502 PRSDQKTS*EVIVFVSATGYVTKTDFKKRIKNYF 603
P ++K +V VF KTD KK + NYF
Sbjct: 270 PSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYF 303
>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 897
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 502 PRSDQKTS*EVIVFVSATGYVTKTDFKKRIKNYF 603
P ++K +V VF KTD KK + NYF
Sbjct: 664 PSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYF 697
>SB_20540| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-11)
Length = 301
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 502 PRSDQKTS*EVIVFVSATGYVTKTDFKKRIKNYF 603
P ++K +V VF KTD KK + NYF
Sbjct: 233 PSFNKKKPRKVFVFKKGNMGAVKTDLKKHLDNYF 266
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,918
Number of Sequences: 59808
Number of extensions: 390626
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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