Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0353
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.28 
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    32   0.28 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    32   0.28 
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    30   1.1  
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   4.5  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 31/63 (49%), Positives = 38/63 (60%)
 Frame = +1

Query: 40  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 219
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 220 RLK 228
            LK
Sbjct: 61  VLK 63



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 28/80 (35%), Positives = 45/80 (56%)
 Frame = +3

Query: 192 LKPTPSHKIPPQIRVHSPYSSVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK 371
           LK     K   ++RV      V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+K
Sbjct: 52  LKDLQLTKFVLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYK 111

Query: 372 LTAARVKRNRARTAVFKSLK 431
           L  A+  RNR        LK
Sbjct: 112 LMKAKQMRNRIVRVELAKLK 131


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 300 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 446
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 276 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 449
           A   EK  +   AQK A  EK+A+ T   + K TA +VK+ ++   + K    K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +3

Query: 276 AKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARA 449
           A   EK  +   AQK A  EK+A+ T   + K TA +VK+ ++   + K    K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKS 184


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 239 QPLLVCEESVDRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRI 418
           +P+L      D C    +   K +  +++ Q+E  TN  L+   V   T   + C DCR 
Sbjct: 85  KPMLTKVRLTDACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRR 144

Query: 419 QELEGEGCACWYLRQ 463
            E +    AC  +RQ
Sbjct: 145 AEAKDFWRACVQVRQ 159


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 476 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 363
           RDI LA  TS RS HL + +  +PGT  L S +  L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 285 NEKWTESQWAQKLANKEKRAQMTDYDRFK 371
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,757
Number of Sequences: 27780
Number of extensions: 281029
Number of successful extensions: 863
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)